Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A15
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0065 - 20635946-20636217,20636541-20636623,20637583-20638262     29   2.7  
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226...    28   4.7  
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18...    28   4.7  
05_03_0258 - 11153709-11156090                                         28   6.2  
11_02_0035 - 7597926-7598105,7598255-7598418,7598673-7598735,759...    27   8.2  
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736...    27   8.2  
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136...    27   8.2  

>09_06_0065 - 20635946-20636217,20636541-20636623,20637583-20638262
          Length = 344

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 395 GSLGICHITRSSNIPPN*GAIRVLREQNCRSSK 297
           G +GICH    SN+PP   A  +LR+     ++
Sbjct: 32  GKIGICHGRVGSNLPPPAAAAALLRQNGITKAR 64


>08_02_0393 +
           16621137-16621139,16621392-16621583,16622559-16622612,
           16623041-16623160,16623280-16623501,16623594-16623650,
           16623993-16624046,16624395-16624426,16624888-16625023,
           16625108-16625278,16625430-16625661,16626018-16626022
          Length = 425

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 476 TVVEALSAAGGSLWFAIIDIQDRFGA 553
           T +E LS+ GG  WF    +QDR  A
Sbjct: 221 THIEKLSSGGGDWWFRWCKLQDRVSA 246


>02_01_0031 -
           187798-187887,187996-188179,188468-188640,188917-189399,
           189557-190213,190821-190837,191501-192041
          Length = 714

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 11  YKGALSLTLRTIFFCRG-MHLRTRWSNLPRENP 106
           YKG L L  R + FCR   H R + ++LPR  P
Sbjct: 134 YKGDLDLWFRYLEFCRDKRHGRMKQASLPRTFP 166


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 159 ASHTCVRDFHTSPLPTFPGFSLGRLDHLVRKCIP 58
           A+ + V    + PLP+ P F   R D L+R  +P
Sbjct: 81  AAQSLVAAISSQPLPSLPAFLSSRRDELLRSDLP 114


>11_02_0035 -
           7597926-7598105,7598255-7598418,7598673-7598735,
           7598839-7599130
          Length = 232

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 298 FDDLQFCSRNTRMAP 342
           FDDL FC+RNT + P
Sbjct: 125 FDDLCFCARNTAVTP 139


>08_02_0250 +
           14772746-14773037,14773141-14773203,14773458-14773621,
           14774126-14774220,14774517-14774728,14774972-14775009,
           14775131-14775424,14775510-14775617
          Length = 421

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 298 FDDLQFCSRNTRMAP 342
           FDDL FC+RNT + P
Sbjct: 125 FDDLCFCARNTAVTP 139


>06_01_0173 -
           1364219-1364836,1364941-1365123,1365215-1365470,
           1365551-1366120,1367066-1367178,1367344-1367816,
           1367906-1367984
          Length = 763

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 264 YAVLHPRKVAGGTGGFSG*CWRF--SSVSPTLIW 169
           + ++ PR++ G  G +S   W F   +++P L+W
Sbjct: 610 WGLISPRRIFGDLGTYSAVNWFFLGGAIAPVLVW 643


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,762,425
Number of Sequences: 37544
Number of extensions: 437999
Number of successful extensions: 1139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)