Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A15
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                31   0.91 
SB_44711| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_16059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)                    27   8.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 328 YYVNKIVGHQSDTGATRSSALLCRIAPTEGGGRNR 224
           Y VNK+ GHQ+   +  +   + RI    GGG +R
Sbjct: 49  YAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHR 83


>SB_44711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 714

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
 Frame = +3

Query: 81  GPTYPGRTPGMLEVGMCESLSRKCERLSHTRLVWDSPTRSANTTH*THRF-------LPP 239
           GP  P +T G  +  M     R+  R   TRL     TR A     T R        LPP
Sbjct: 32  GPRSPCQTSGGSQ-RMASRSQRRVARSGGTRLPVQRLTRRAGIRRKTQRLTMASGYVLPP 90

Query: 240 PSVGAIRHSNALDR 281
           P+   I +SNA D+
Sbjct: 91  PAPLEIHNSNAADK 104


>SB_16059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 140 ETFTHPHFQHSRGSPWVGWTI 78
           E  T  H Q  R SPW GW I
Sbjct: 5   EESTPLHIQRDRRSPWTGWLI 25


>SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)
          Length = 491

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 241 LPWVQYGIATHS-TALPQYH 297
           LPWVQ G+AT   TALP  H
Sbjct: 173 LPWVQGGVATSPVTALPWVH 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,157,919
Number of Sequences: 59808
Number of extensions: 492856
Number of successful extensions: 1133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)