Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A15
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17990.1 68417.m02677 hypothetical protein contains Pfam prof...    31   0.74 
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica...    27   9.1  

>At4g17990.1 68417.m02677 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 265

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -2

Query: 537 WISIMANHKDPPAADSASTTVTKVYLEDYFALYTLFIIIIRKK 409
           +I+++A  KDP A  S  T  TKV  EDY  + TL + + R K
Sbjct: 117 YITLVA--KDPSAGGSLVTFQTKVVHEDYSKINTLTVYLARLK 157


>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to RUSH-1alpha [Oryctolagus cuniculus]
           GI:1655930; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1226

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 325 YVNKIVGHQSDTGATRSSALLCRIAP 248
           Y+N + G+ S  GAT++S+L+   +P
Sbjct: 159 YLNNMPGNDSGIGATQNSSLMSHFSP 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,213
Number of Sequences: 28952
Number of extensions: 331295
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)