Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A14
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   190   8e-49
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   189   1e-48
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   174   3e-44
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    30   1.1  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  190 bits (462), Expect = 8e-49
 Identities = 97/179 (54%), Positives = 123/179 (68%), Gaps = 6/179 (3%)
 Frame = +2

Query: 23  DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 202
           ++K +RT  +S+DV               T + FN +IL+RLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70

Query: 203 M--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTF 364
           M  K P R  +    IAV+VGTV++D R+Y VP M VAAL  TE ARARI+ AGGE LTF
Sbjct: 71  MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTF 130

Query: 365 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSRRSN 541
           DQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG +  +   R N
Sbjct: 131 DQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRN 189


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  189 bits (460), Expect = 1e-48
 Identities = 95/173 (54%), Positives = 118/173 (68%)
 Frame = +2

Query: 23  DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 202
           ++K +RT  +S DV               T + FN +IL+RLFMS+ NRPP+SL RLA+ 
Sbjct: 11  NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70

Query: 203 MKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALR 382
           M+    E  IAV+VGTV++D R+  +PKM V AL  TE ARARI+ AGGE LTFDQLALR
Sbjct: 71  MEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129

Query: 383 APTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSRRSN 541
           AP G  TVL++G +NAREAVRHFG APG P SHTKPYVR+KG +  +   R N
Sbjct: 130 APLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRN 182


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  174 bits (424), Expect = 3e-44
 Identities = 97/190 (51%), Positives = 120/190 (63%), Gaps = 17/190 (8%)
 Frame = +2

Query: 23  DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 202
           ++K +RT  KS DV               T + FN +ILRRLFMS+ NRPP+SL RL R 
Sbjct: 11  NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70

Query: 203 MKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALR 382
           M+   +E  IAV+VGTV++D R+Y VP M VAAL  TE ARARI+  GGE LTFDQLALR
Sbjct: 71  MEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALR 128

Query: 383 APTGRKT-----------------VLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH 511
           AP G+ T                 VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG 
Sbjct: 129 APLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGR 188

Query: 512 EHARPSRRSN 541
           +  +   R N
Sbjct: 189 KFEKARGRRN 198


>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 301 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 140
           C Y H R S  V  H   +C N++      C   HV C+  +  RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,718
Number of Sequences: 37544
Number of extensions: 331076
Number of successful extensions: 983
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)