Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A14
(554 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 2e-43
SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097) 29 2.6
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07) 28 5.9
SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084) 28 5.9
SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7) 27 7.8
SB_7409| Best HMM Match : DUF963 (HMM E-Value=1.6) 27 7.8
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 171 bits (417), Expect = 2e-43
Identities = 92/179 (51%), Positives = 112/179 (62%), Gaps = 5/179 (2%)
Frame = +2
Query: 2 IDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPIS 181
IDI KH +K R E SQ+V TNAKFNQI+++RL MSR RPP+S
Sbjct: 110 IDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLS 169
Query: 182 LSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILT 361
L+RL R MK + I VVVG++++D R++ VP + + AL +E ARARIL AGGEILT
Sbjct: 170 LARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILT 229
Query: 362 FDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTK-----PYVRTKGHEHAR 523
FDQLALRAP G+ TVL+QG R AREA RH G APG P S T Y+ T G R
Sbjct: 230 FDQLALRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDTNWCGDLDYIGTDGDAQCR 288
>SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -2
Query: 526 RPCVLVSLGAHVWFSM*TRCTRRRPEVTNCLTSITATLNQYCLTSSGRTE 377
RPC+ H + T T P + CLTSIT+T Q CLTS T+
Sbjct: 55 RPCLTSMTSTHPQPYL-TSITTTEPPL--CLTSITSTDPQLCLTSITSTD 101
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 439 CLTSITATLNQYCLTSSGRTE 377
CLTSIT+T Q CLTS T+
Sbjct: 21 CLTSITSTDPQLCLTSITSTD 41
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = -2
Query: 526 RPCVLVSLGAHVWFSM*TRCTRRRPEVTNCLTSITATLNQYCLTSSGRTE 377
RPC L S+ T T P+ CLTSIT+T Q CLTS T+
Sbjct: 103 RPC-LTSITLTYPRPYLTSITSTHPQP--CLTSITSTDPQPCLTSIKSTD 149
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 439 CLTSITATLNQYCLTSSGRTE 377
CLTSIT+T Q CLT TE
Sbjct: 201 CLTSITSTDPQPCLTGINTTE 221
>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
Length = 1366
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 489 HTCAPRDTSTHGRAVAPMS 545
H CA STHGRAVA M+
Sbjct: 14 HACATETVSTHGRAVALMA 32
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +2
Query: 185 SRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTF 364
SRL MK PT++G+ V VS +T A E+ RAR+L G +
Sbjct: 92 SRLYEEMKHPTQDGMFVAVNSEVSVTFVGKEKEDVTFAKCAWFER-RARMLKGFGFVTFR 150
Query: 365 DQLALRAPTGRKTVLVQGR 421
D + + +K ++ G+
Sbjct: 151 DPATIESVLAKKPHILDGK 169
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 347 GEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRS 478
GE+++ D++ +A R + N EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657
>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
Length = 1844
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 259 IGDCANDYSDQ-TLACRLLHVACQTGQRNRRSVDTAHK 149
IG+ +N S+ +LA R++H GQ N SV T HK
Sbjct: 657 IGESSNSSSNYASLASRIMHGDDVPGQDNDGSVSTIHK 694
>SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)
Length = 682
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 353 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRT 502
I+T + AL A GR +V GRR AVR AP ++ K Y++T
Sbjct: 58 IVTGRRFALTAVVGRVAGIVTGRRFILTAVRVERFAPKERQTALKGYLKT 107
>SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)
Length = 284
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 106 THECQVQPDHPTEIVYEPYQPTSDFFVPFG 195
T + +P PT+I + ++P++DFF P G
Sbjct: 16 TKSYKKEPTKPTQIHTKRWRPSTDFFEPDG 45
>SB_7409| Best HMM Match : DUF963 (HMM E-Value=1.6)
Length = 183
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 121 VQPDHPTEIVYEPYQPTSDFFVPF 192
+ P P+ I+ PYQP+S P+
Sbjct: 121 INPYQPSSIIINPYQPSSTIINPY 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,008,590
Number of Sequences: 59808
Number of extensions: 373247
Number of successful extensions: 1057
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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