Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A14
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 189 1e-48
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 182 1e-46
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 154 4e-38
At1g61900.2 68414.m06984 expressed protein contains similarity t... 29 2.1
At1g61900.1 68414.m06983 expressed protein contains similarity t... 29 2.1
At2g18850.1 68415.m02196 SET domain-containing protein low simil... 28 3.6
At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase fa... 28 4.8
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 28 4.8
At3g09000.1 68416.m01053 proline-rich family protein 27 6.4
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 27 8.4
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 189 bits (460), Expect = 1e-48
Identities = 95/173 (54%), Positives = 122/173 (70%), Gaps = 2/173 (1%)
Frame = +2
Query: 26 RKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARHM 205
+K +RT KS DV TN+KFN +IL+RLFMS++N+ P+SLSRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 206 KKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 385
+E IAV+VGT+++D+R++ +P M V AL TE+ARARI AGGE LTFDQLALRA
Sbjct: 72 TG--KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 386 PTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHARPSRRS 538
P G+ TVL++G +N+REAV+HFGPAPG P SH+KPYVR KG E AR R+S
Sbjct: 130 PLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKS 182
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 182 bits (443), Expect = 1e-46
Identities = 92/173 (53%), Positives = 121/173 (69%), Gaps = 2/173 (1%)
Frame = +2
Query: 26 RKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARHM 205
+K +RT KS DV +N+ FN +IL+RLFMS++N+ P+SLSRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 206 KKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 385
++ IAV+VGT+++D+R++ +P M V AL TE+ARARI AGGE LTFDQLALRA
Sbjct: 72 TG--KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 386 PTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHARPSRRS 538
P G+ TVL++G +N+REAV+HFGPAPG P S+TKPYVR KG E AR R+S
Sbjct: 130 PLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKS 182
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 154 bits (373), Expect = 4e-38
Identities = 81/132 (61%), Positives = 97/132 (73%), Gaps = 3/132 (2%)
Frame = +2
Query: 152 MSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARAR 331
MS++N+ P+SLSRL R+M ++G IAV+VGTV++DVR+ VP +TV AL TE ARAR
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58
Query: 332 ILAAGGEILTFDQLALRAPT-GRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKG 508
I AGGE LTFDQLAL PT TVL++G +N REAV+HFGPAPG P SHTKPYVR G
Sbjct: 59 IHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTG 118
Query: 509 H--EHARPSRRS 538
E AR RRS
Sbjct: 119 KKIEIARGRRRS 130
>At1g61900.2 68414.m06984 expressed protein contains similarity to
glutamic acid/alanine-rich protein GI:6707830 from
[Trypanosoma congolense]
Length = 413
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = -2
Query: 265 HIIGDCANDYSDQTLACRLL-----HVACQTGQRNRRSVDTA 155
HI G+C+N+ S+QT CR + H+ QT N +++D A
Sbjct: 271 HIGGNCSNELSNQTGCCRAMESYVSHLQKQTLITNLQALDCA 312
>At1g61900.1 68414.m06983 expressed protein contains similarity to
glutamic acid/alanine-rich protein GI:6707830 from
[Trypanosoma congolense]
Length = 433
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = -2
Query: 265 HIIGDCANDYSDQTLACRLL-----HVACQTGQRNRRSVDTA 155
HI G+C+N+ S+QT CR + H+ QT N +++D A
Sbjct: 271 HIGGNCSNELSNQTGCCRAMESYVSHLQKQTLITNLQALDCA 312
>At2g18850.1 68415.m02196 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 448
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 428 HYGDPEPVLSYVQWAHG 378
HYG P P+L+Y++ AHG
Sbjct: 346 HYGLPTPLLNYLRKAHG 362
>At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase
family protein contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 754
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 262 IIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP*DDLVELGI 113
+ G A SDQ L C + CQ G NR+ D+ + + +DL L I
Sbjct: 468 LAGHEATSSSDQVLPCENMASDCQFGIENRKPDDSGNLSTA-EDLSSLTI 516
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 350 EILTFDQLALRAPTGRKTVLVQGRRNAREAV 442
E L FD L L+ P+G+ LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.5 bits (58), Expect = 6.4
Identities = 25/74 (33%), Positives = 32/74 (43%)
Frame = -3
Query: 441 TASRALRRP*TSTVLRPVGARRANWSNVRISPPAAKMRARAFSVTCSAATVILGTV*SLT 262
T +R P TST RPV R SN R S P ++ A T S A T S +
Sbjct: 161 TPTRRSTTPTTSTS-RPVTTRA---SNSRSSTPTSRATLTAARATTSTAAPRTTTTSSGS 216
Query: 261 SLETVPTTTAIKPS 220
+ PT + +PS
Sbjct: 217 ARSATPTRSNPRPS 230
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 125 NQIILRRLFMSRINRPPISLSRLARHMKKPTREGLI 232
+Q + + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,675
Number of Sequences: 28952
Number of extensions: 240029
Number of successful extensions: 632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -