Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A13
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    31   0.64 
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851...    30   1.1  
11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871     29   2.0  
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635...    29   2.6  
03_02_0040 + 5221015-5221322,5221423-5222254                           28   4.5  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    28   6.0  
12_01_1110 + 11756814-11757485,11757566-11757644,11757705-117579...    27   7.9  

>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 229  LKCQKLILVKNLENNHTEILKSYLHLG 149
            L+   L+ +  LEN HTEI++ + HLG
Sbjct: 1262 LRRNHLVQIDTLENKHTEIMEKHRHLG 1288


>03_03_0254 +
           15884149-15884295,15884765-15884803,15884958-15885136,
           15887175-15887310,15887769-15887865,15888448-15888534,
           15888621-15888721,15888905-15888939,15889520-15889577,
           15889650-15889724,15890048-15890135,15890155-15890308,
           15890395-15890638
          Length = 479

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
 Frame = +2

Query: 230 CGWPSLSKEPIENEDP---VYALVLADIHLLGSHN--------GHWFDKWRREWQMHRAF 376
           C WPS S  P  +  P   V   V+AD  L+ S +             ++  +  M R+F
Sbjct: 34  CSWPSSSSSPPSSLSPNNHVKIAVVADPQLMDSTSLGLPPSSIALQAAEFYTDLNMRRSF 93

Query: 377 QSAITIHSPDIVFILG*H 430
           QS +    PD++  LG H
Sbjct: 94  QSVVLPFKPDMLLFLGDH 111


>11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871
          Length = 148

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 400 PRHSFHLRITPQLLKRFESKLNSPPVKMISIKGNNF 507
           P  S  +  TP LL    S  + PP++M S +G NF
Sbjct: 103 PTASLPMTTTPPLLYPTRSPCHRPPLRMASPRGGNF 138


>06_01_0837 -
           6355315-6355342,6356185-6356361,6356579-6356662,
           6356989-6357542,6358086-6358322
          Length = 359

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +2

Query: 287 LVLADIHLLGSHNGHWFDKWRREWQMHRAFQSAITIHSPDIVFILG 424
           ++++D+ LLGS +  + D++ R   M + F  +I    PD++ +LG
Sbjct: 50  MMVSDLMLLGS-DATYADRFFRNHVMSKLFAKSIETLRPDMIVVLG 94


>03_02_0040 + 5221015-5221322,5221423-5222254
          Length = 379

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 230 CGWPSLSKEPIENEDPVYALVLAD-IHLLGSHNGHWFDKWRREWQMHRAFQSAITIHSPD 406
           CG   ++K   E +   Y LV  D +     HN    D +R EW + +A  SA  +H+  
Sbjct: 42  CGDGGVAKRCCERK---YELVSYDALPAFLKHNEFIIDYYRSEWPIKQALLSAFAVHNET 98

Query: 407 I 409
           +
Sbjct: 99  V 99


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 236  WPSLSK--EPIENEDPVYALVLADIHLLGSHNGH 331
            W +LS+  +  +N   V   +  ++HL+GS NGH
Sbjct: 1437 WDALSRRWKQRKNVQQVSLFIFDELHLIGSENGH 1470


>12_01_1110 +
           11756814-11757485,11757566-11757644,11757705-11757991,
           11758072-11758131,11758311-11758976
          Length = 587

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 335 FDKWRREWQMHRAFQSA 385
           FDKW  EW++H   QSA
Sbjct: 194 FDKWWGEWKLHLFHQSA 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,653,225
Number of Sequences: 37544
Number of extensions: 270157
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)