Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A13
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19017| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               29   2.0  
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              28   6.1  

>SB_19017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 29/46 (63%), Positives = 37/46 (80%)
 Frame = +2

Query: 287 LVLADIHLLGSHNGHWFDKWRREWQMHRAFQSAITIHSPDIVFILG 424
           ++LAD HLLG  +GHWFDK RREWQM R FQ+A+T+  P+ VF+LG
Sbjct: 1   MMLADTHLLGPIDGHWFDKLRREWQMRRTFQTALTLFRPEAVFVLG 46



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 499 NNFVLINSMALEGDGCTLCS 558
           + FV +NS+ LEGD C++C+
Sbjct: 92  DRFVFVNSIGLEGDSCSMCN 111


>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1258

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +1

Query: 409 SFHLRITPQLLKRFESKLNSPPVKMISIKG 498
           SF LR   QLL R E  L+ PPVK    KG
Sbjct: 283 SFKLRTQQQLLVRNEQGLDQPPVKHKESKG 312


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 251  KEPIENEDPVYALVLADIHLLGSHNGHWFDKWRREWQMHRAFQSAITIHSPDI 409
            +EP  N+DP Y +   D+H   +  G      + E ++HR    + T  SP +
Sbjct: 2466 EEPTRNDDPSYQIARDDVH--STPRGELSPSPQGELELHRGGGRSRTSGSPGL 2516


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +2

Query: 122 YCDYLVYYITQMQVTFQNFCMIIFQVLY*Y*FLAL*C---GWPSLSKEPIENEDPVYALV 292
           Y + L+ Y   +  TF+ +   I  V +   FLA+ C   GW ++  + IEN+  + +++
Sbjct: 345 YHECLLKYTDNVIGTFK-YWFFIHSVFF---FLAILCSIAGWVAVVSKAIENDSHIGSII 400

Query: 293 LADI 304
           LA++
Sbjct: 401 LAEV 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,215
Number of Sequences: 59808
Number of extensions: 313216
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)