Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A13
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical ...    72   3e-13
U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine rec...    32   0.33 
AF016414-6|AAG24022.1|  323|Caenorhabditis elegans Serpentine re...    31   0.76 
Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    27   9.4  

>AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical
           protein B0511.13 protein.
          Length = 473

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 32/65 (49%), Positives = 42/65 (64%)
 Frame = +2

Query: 230 CGWPSLSKEPIENEDPVYALVLADIHLLGSHNGHWFDKWRREWQMHRAFQSAITIHSPDI 409
           C WP   K    +E  V A +++D HLLG  NGHW DK +REWQM+++F  +  IHSPD+
Sbjct: 33  CQWPC--KYGRCSESSVKAFMISDTHLLGKINGHWLDKLKREWQMYQSFWISTWIHSPDV 90

Query: 410 VFILG 424
            F LG
Sbjct: 91  TFFLG 95



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +1

Query: 412 FHLRITPQLLKRFESKLNSPPVKMISIKGNNFVLINSMALEGDGCTLCSRA 564
           FH  I P+ L+ F+ +     +  + IK + FVLINSMA+ GDGC LC  A
Sbjct: 137 FHYAIMPETLEMFKKEFRRGLIDEMKIKKHRFVLINSMAMHGDGCRLCHEA 187


>U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein200 protein.
          Length = 343

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 53  NLRRKFFISVLPRFILGLVFIYFYCDYLV 139
           NL+RKFFI++L + I+ LVF +F   Y++
Sbjct: 238 NLQRKFFITLLIQLIVPLVFFFFPSFYVL 266


>AF016414-6|AAG24022.1|  323|Caenorhabditis elegans Serpentine
           receptor, class h protein211 protein.
          Length = 323

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 56  LRRKFFISVLPRFILGLVFIYFYCDYLVYYITQ--MQVTFQNFCMII 190
           L+RKFFIS++ + I+    I     Y  Y ++Q     TF N   II
Sbjct: 234 LQRKFFISIITQTIIPFAIIILPISYCGYSLSQEYYNQTFNNIAFII 280


>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 53  NLRRKFFISVLPRFILGLVFIYFYCDYLVYYITQMQVTFQNFC 181
           N  R+ F  +  + +LG + + F+   L Y+I  ++VT  + C
Sbjct: 65  NANRRPFAGLYVKILLGCLVLLFFFGDLFYFILNVKVTTPDQC 107


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 233 GWPSLSKEPIENEDPVYALVLADIHLLGSHNGHWFDKWRREWQ 361
           GW    K+ IEN  P   + +    LLG       D+WR+ +Q
Sbjct: 71  GWADYCKKVIENWTPHQDMTIPLEFLLGFFVTTVIDRWRKAFQ 113


>U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical
           protein K06A1.2 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 165 LFKISV*LFSRFFTNINFWHFSAGGRLCRKNQLKMKIQCTHWFWLIY 305
           L  + + ++  F + +  WH       CR N    +   +H+F L+Y
Sbjct: 145 LITVPIFVYECFLSTVCLWHKDHEPGYCRLNGAIWQFMLSHFFILVY 191


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/62 (19%), Positives = 28/62 (45%)
 Frame = +2

Query: 20  FYWKIMTLIHRNLRRKFFISVLPRFILGLVFIYFYCDYLVYYITQMQVTFQNFCMIIFQV 199
           F ++ + + + +L +K+F   +    +   F YFY     Y++ Q     + +    F +
Sbjct: 110 FIYRYLVIHNSSLTKKYFYIYMLGSFITFAFYYFYWYATCYFLGQAGPEMKQYVSEDFAI 169

Query: 200 LY 205
           +Y
Sbjct: 170 VY 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,971,049
Number of Sequences: 27780
Number of extensions: 250965
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)