Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A13
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 406 HSFHLRITPQLLKRFESKLNSPPVKMISIKGNNFVLINSM 525
           HS   RI  + +K+   +LN      +S+KG    L+N++
Sbjct: 490 HSKSSRINIERMKQVYQQLNKYRGNGVSLKGETVGLLNAL 529


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +2

Query: 47  HRNLR--RKFFISVLPRFIL 100
           HR  R  R  FI VLPRF+L
Sbjct: 331 HRMARWVRVVFIQVLPRFLL 350


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 421 RITPQLLKRFESKLNSPPVKMISIKGNNFVLINSMA 528
           RI+PQ+LK  +    SP   + ++  NN    N ++
Sbjct: 13  RISPQILKNDKRIYLSPRTPIKNVYKNNIETKNQLS 48


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 266 NEDPVYALVLADIHLLGSHNGHWFDKWRREWQMHRAFQSAITI 394
           N DP Y+  + + +++ SH G         W  H  F+S+  I
Sbjct: 97  NADPQYSSAVINTNVIVSHTGEVV------WLSHGIFRSSCDI 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,137
Number of Sequences: 438
Number of extensions: 3126
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)