Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A13
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33480.1 68417.m04755 expressed protein                             29   2.2  
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom...    27   6.6  
At4g24320.1 68417.m03491 hypothetical protein                          27   8.7  
At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 fam...    27   8.7  

>At4g33480.1 68417.m04755 expressed protein 
          Length = 336

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 233 GWPSLSKEPIENEDPVYALVLADIHLLGSHNG 328
           GW ++S E +E+  P  A  LA IH+   H+G
Sbjct: 195 GWSAVSDEEVESLLPAAAYALAKIHMHLVHSG 226


>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 671

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 251 STKTATRTKVPKINISKEPGK*SYRNFEKLPAFG*YNKQGNHNK 120
           +T TA+ + V   ++ ++P   SYR FE L  FG  +  G HNK
Sbjct: 606 ATSTASNSGV---SVGQKPFVPSYRLFEDLDVFG--SADGKHNK 644


>At4g24320.1 68417.m03491 hypothetical protein
          Length = 395

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 400 PRHSFHLRITPQLL---KRFESKLNSPPVKMISIK 495
           P H  H+R+TPQ L   K  E+   SPP + ++++
Sbjct: 95  PSHPLHVRLTPQALTLHKEEETIHLSPPQRNVTVQ 129


>At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 750

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 65  KFFISVLPRFILGLVFIYFYCDYLVYYITQMQVTFQNFCMIIFQVL 202
           K    +LP FIL LV    +C + ++Y +        F M++F+ +
Sbjct: 468 KTMTELLPMFILALVVAILFCPFNIFYRSSRVF----FLMVVFRCI 509


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,958,344
Number of Sequences: 28952
Number of extensions: 225039
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)