Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A12
(255 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 0.69
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 0.91
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 1.2
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 2.1
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 24 2.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 2.8
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 3.7
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 24 3.7
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 24 3.7
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 23 4.9
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 4.9
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 23 4.9
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 6.4
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 6.4
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 23 8.5
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 0.69
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +2
Query: 143 GHPLPDIVRTRPPQFVFAR--ACCLYKDCALSPIRRIH 250
GHP P V T PP + C YK C R IH
Sbjct: 231 GHPSPATVTTLPPFMSMSTIPIPCKYKPCLNPACRFIH 268
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 0.91
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 188 QTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYL 42
+T DA + L +G H D NRP AKL + + + L DY+
Sbjct: 410 KTFYDAFSKNLKLGIH--EDAANRPALAKLLRYNSLNSPDDLISLEDYI 456
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 1.2
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 233 VTMHNPCKDSMHAQIQTEVD-ASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMK 57
+T+ +P K+ ++T + AS+Q + ++ N P F DAASEE EH
Sbjct: 372 ITVTDPSKNLYERSVKTAAELASLQNVTETT--DNEIPNSPDF----LDAASEEDEHIPS 425
Query: 56 L 54
L
Sbjct: 426 L 426
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 2.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 146 HPLPDIVRTRPPQFVFARACCLYKDCALSPI 238
HPL + R Q + C +Y C+++PI
Sbjct: 298 HPLQLRILIRGLQLLKVGGCLVYSTCSINPI 328
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.2 bits (50), Expect = 2.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 179 PQFVFARACCLYKD 220
P+FV+A ACC + D
Sbjct: 564 PRFVYAIACCAFGD 577
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.2 bits (50), Expect = 2.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 70 SLSSLAASKNSFANPGRLITSREKWAPIARYCTD 171
SLS+ + ++S A GR T K + RYC +
Sbjct: 1491 SLSTPLSQESSLARSGRKNTPSYKQKALRRYCME 1524
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 23.8 bits (49), Expect = 3.7
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 25 SSPLMSK*SISFIACSLSSLAASKNSF-ANPGRLITSREKWAPIARYCTDASTSV 186
S PL S F S SS +S++SF A+P + + +W + + + S S+
Sbjct: 341 SLPLNIDSSPIFTNHSPSSSLSSESSFEASPSSFVDRKNRWIQMLKKADEHSRSI 395
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 23.8 bits (49), Expect = 3.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 233 VTMHNPCKDSMHAQIQTEVDASVQYLAMGAH 141
V + N C + Q+ T+ VQYL G H
Sbjct: 128 VNLGNTCFMNSVLQLMTQTPPLVQYLLSGQH 158
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 23.8 bits (49), Expect = 3.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 141 MGTHCQILYGRVHLSLYLRVHAVFTRIVH 227
+G C+IL + L++YL V+ + +H
Sbjct: 112 LGRKCRILTRKFRLAVYLSTSLVYIKQLH 140
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 23.4 bits (48), Expect = 4.9
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = +2
Query: 137 RNGHPLPDIVRTRPPQFVFARACCLYKDCALSPIRRIH 250
R GH L DI R P ++ + C R+H
Sbjct: 866 RRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVH 903
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 23.4 bits (48), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 78 REGACDEADRLLAHEGRA 25
++GA DE RLL HE R+
Sbjct: 40 QQGAPDEETRLLEHERRS 57
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 23.4 bits (48), Expect = 4.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 112 PGRLITSREKWAPIARYCTD-ASTSVC---ICACMLSL 213
P + RE PI RYC D S VC +C +SL
Sbjct: 281 PACIYCLREWKKPICRYCIDLRSCLVCDSFVCPSCISL 318
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 23.0 bits (47), Expect = 6.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 18 KNKLSPHEQVVDQLHRMLPLFASRVE 95
K+ +PH++ + + +L FA R+E
Sbjct: 86 KSNPNPHKRRIKRFRNLLKTFACRIE 111
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 224 HNPCKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFA 105
H ++S+H ++ + ++ V+ + R+V + P FA
Sbjct: 386 HKDLEESVHQKLNSNLEKRVEKYIKHSCSQRNVADHPDFA 425
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 22.6 bits (46), Expect = 8.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 90 VEEQLRESWTIDHVTGEMGTHCQILYGRVH 179
VEE+ E + TGE+ C L G H
Sbjct: 178 VEEESSEESAFNPDTGEINWDCPCLGGMAH 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,109,276
Number of Sequences: 5004
Number of extensions: 20053
Number of successful extensions: 52
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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