Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A10
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    46   3e-06
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   2.6  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   2.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.6  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.4  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   7.9  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   7.9  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   7.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.9  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   7.9  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
 Frame = +2

Query: 227 IRAAYEDVRSDASPTEWAVFKFE---GARIICSGRGSDFTEFRTQFSDDERAFGYLRLQM 397
           IR  YE V S A    WA+F +E   G  +     G+D  EF  +F ++   FG+LR++ 
Sbjct: 14  IRNVYEKVLSGADDCSWAIFGYEKGQGNILKVVASGNDNDEFLDEFDENAVLFGFLRVK- 72

Query: 398 GDEMSKRKKFMFVTWVGPNVSVINRAKMSTDKAIIKDLISNF 523
            D  +   KF+ V W G   +   +   S   A + +L+  +
Sbjct: 73  -DVNTGLNKFVLVCWCGE--AAARKGLFSIHMATVSNLLKGY 111


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 432 NMNFLRFDISSPICNLR*PNARSSSENCVR--NSVKSLPRPEHIIRAPSNLKTAHSVGEA 259
           N+N   F+  SP+ N    N   SS+N V   N+++S P P      P     + +V  +
Sbjct: 186 NLNTSSFNTRSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQIDSQNVKRS 245

Query: 258 SDLTSS 241
           ++  S+
Sbjct: 246 NNYLST 251


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 272 EWAVFKFEGARIICSGRGSDFTEFRTQFSDDERAF 376
           EW VF     R       +DF +FR+Q  DDE  F
Sbjct: 888 EWNVFAQYKRR---ESNATDFEDFRSQVGDDESKF 919


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 161  IPNPPTLLSQ**KITVICTVFYFYKFFGIFTSFKSHSISYFVYN 30
            + + P LLSQ      +C   YFY  F   +S KS S     YN
Sbjct: 1680 VEHMPNLLSQ----EALCAKLYFYTAFECMSSLKSDSHDTEEYN 1719


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = -2

Query: 507 SLMIALSVDILARLMTDTFGPTHVTNMNFLRFDISSPICNLR*PNARSSSENCVRNSVKS 328
           S+  A+S  ++      TF P+   ++N+       P    R   + SSS + +  S  S
Sbjct: 10  SIFTAISYLVVDGATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSSISTSHDS 69

Query: 327 LPRPEHIIRAPSNLKTAHSVG----EASDLTSS 241
             +P     +PS+  T+ S G     ASD+++S
Sbjct: 70  --QPSTSSSSPSSTSTSSSSGTSVITASDVSAS 100


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 363 SSENCVRNSVKSLPRPEHIIRAPSNL 286
           S  N  +N++ S+P P  +   PSNL
Sbjct: 522 SQANAPKNALHSMPSPTSLANLPSNL 547


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 320 RGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFVTWVGPNVSVINRAKMSTDKAI 499
           R   F  FR   +D +R   +LRL      SKR K +   W   NVS+++   ++  K +
Sbjct: 213 RFQTFETFRKPLAD-KRRIEFLRL------SKRMKKLEELWTSENVSMLDALLLNKAKRL 265

Query: 500 IKDLI 514
            + ++
Sbjct: 266 EQSIV 270


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 199 RYFSWTILHNCFVFQTLRHCS 137
           +YF+ T LH  FVF  L  CS
Sbjct: 38  KYFTKTHLHRLFVFVVLLLCS 58


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 166 FVFQTLRHCSH--NNKKSQLYAQSFIFINFLVYLPV 65
           FV  TL+ C    +    + +   FIFI FLV++P+
Sbjct: 371 FVASTLQACVKVISTTHREYHLAVFIFIQFLVFVPL 406


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -1

Query: 541 NCSSTAKIGN*IFDDSLIR-GHLGAVDDRHVRSDPRYEHEFLAFRHLVAHLQP-QVTECA 368
           N +S +KI   +F + +   GHL ++    + + P + + F  FR+ ++HL+P Q    +
Sbjct: 512 NTTSASKIYE-LFSEPIPEVGHLESL----MITSPSWSYIFNVFRYYISHLKPVQTVVTS 566

Query: 367 FVIRELRTELCEVTSTS 317
             +  + T+  E+ + S
Sbjct: 567 SGLARVHTDPSEIDTDS 583


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 305  IICSGRGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFV 436
            +I S  G D+ + R   S  + A+G  +    D++SK K+FMF+
Sbjct: 904  VIWSSGGVDY-DLRPHHSVPDTAYGMAK----DKLSKPKRFMFL 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,509
Number of Sequences: 5004
Number of extensions: 55011
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)