Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A10
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0175 - 18936752-18937621,18938855-18941641                       31   0.66 
04_04_1463 + 33787799-33787973,33788669-33789096                       29   3.5  
11_06_0507 + 24402239-24402297,24402686-24402753,24403704-244037...    28   4.6  
04_04_1372 + 33008740-33009130,33009485-33011544                       28   4.6  
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534...    28   4.6  

>01_05_0175 - 18936752-18937621,18938855-18941641
          Length = 1218

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = +2

Query: 302 RIICSGRGSDFTEFRTQFSDDERAFGYL-RLQMGDEMSKR-----KKFMFVTWVGPNVSV 463
           +++CS  G D  E R       RA+     ++  + + +       +F+ VT++   + V
Sbjct: 423 KLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQV 482

Query: 464 INRAKMSTDKA-IIKDLISNFC-SRATVGKSIR 556
           +N   +++  A I+KDL+SNF   + TV K +R
Sbjct: 483 LNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVR 515


>04_04_1463 + 33787799-33787973,33788669-33789096
          Length = 200

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 148 GGFGIRNNCAEWSKKSNDDHRYR-PGYDTGG 237
           GG+G+R   AEW+ +S      R PG D GG
Sbjct: 127 GGYGVRRATAEWAMRSGRRVGARAPGDDGGG 157


>11_06_0507 +
           24402239-24402297,24402686-24402753,24403704-24403785,
           24403894-24403945,24405368-24405413,24405568-24405626,
           24405736-24405803,24406009-24406119,24406236-24406312,
           24406478-24406554
          Length = 232

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 353 FSDDERAFGYLRLQMG-DEMSKRKKFM--FVTWVGPNVSVINRAKMSTDKAIIKD 508
           F  +ER   Y     G +   + KKFM  +V + G + +V NRA + TDK  +++
Sbjct: 13  FDKEERKMQYQSHIRGLNAYDRHKKFMKDYVQFYGHDKNVDNRAPIKTDKDTLRE 67


>04_04_1372 + 33008740-33009130,33009485-33011544
          Length = 816

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -2

Query: 438 VTNMNFLRFDISSPICNLR*PNARSSSEN-CVRNSVKSLPRPEHIIRAPSNLKTAHSVGE 262
           + N  F  +D+   + NLR  +  S+  N  + +S+ SLPR EH+  + +  + +  V  
Sbjct: 121 MNNATFQSWDVFESLRNLRELDLSSNRLNGSIPSSLFSLPRLEHLSLSQNLFEGSIPVTL 180

Query: 261 ASDLTSS 241
           +S++TS+
Sbjct: 181 SSNITSA 187


>01_05_0037 -
           17452503-17452523,17452594-17452689,17453315-17453419,
           17453699-17453869,17454309-17454378,17454698-17454879,
           17457297-17457406,17458353-17458457,17458537-17458615,
           17458722-17458762,17459019-17459097,17460620-17460814
          Length = 417

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -2

Query: 189 LGP-FCTIVSYSKPSDIALTIIKNHSYMHSLLFL*IFWYIY 70
           +GP F   ++Y  PS++   ++   S+ +SLL++ +F +I+
Sbjct: 76  VGPGFVISIAYLDPSNLQTDLVAGSSHRYSLLWVLLFGFIF 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,951,505
Number of Sequences: 37544
Number of extensions: 350010
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)