Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A10
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)          108   3e-24
SB_9724| Best HMM Match : Cofilin_ADF (HMM E-Value=0.069)              36   0.018
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.1  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     29   2.7  
SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)                  28   4.8  
SB_13069| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)            28   4.8  
SB_15897| Best HMM Match : DUF134 (HMM E-Value=7.5)                    28   4.8  
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               28   4.8  

>SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)
          Length = 141

 Score =  108 bits (260), Expect = 3e-24
 Identities = 44/105 (41%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
 Frame = +2

Query: 212 IDRDTIRAAYEDVRSDASPTEWAVFKFEGARIICSGR-GSDFTEFRTQFSDDERAFGYLR 388
           ++++ I  A  D+R++ S   WAVF ++ +  IC  + G ++ EF  +F + +RA+ Y+R
Sbjct: 4   VNKEQITEACVDIRNNDSENTWAVFTYDESNTICLHKSGKEYDEFLAEFDESDRAYAYVR 63

Query: 389 LQMGDEMSKRKKFMFVTWVGPNVSVINRAKMSTDKAIIKDLISNF 523
           ++ GDE+S+R KF F+TWVGP+VS + +AK+STDKA +K ++ NF
Sbjct: 64  IETGDELSRRAKFAFITWVGPSVSPLKKAKVSTDKAFVKQVLQNF 108


>SB_9724| Best HMM Match : Cofilin_ADF (HMM E-Value=0.069)
          Length = 249

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 305 IICSGRGSD-FTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFVTWVGPNVSVINRAKM 481
           II  G+GS    E  +   +D  ++  LR+    +     KF+F+ W+G +V  + + K+
Sbjct: 165 IILGGKGSGGLPEMASCMKEDYVSYALLRVTDIVDQISTVKFVFIQWIGESVKPMTKGKI 224

Query: 482 STDK 493
           ST K
Sbjct: 225 STHK 228



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 383 LRLQMGDEMSKRKKFMFVTWVGPNVSVINRAKMSTDKAIIKDLISNF-CSRATVGKS 550
           +RLQ   ++S   KF+++ WVG +V    + +       IK+ I  + C   T  K+
Sbjct: 80  VRLQEKVDLSSTVKFVYIHWVGESVPFTKKGRYGVVHGSIKEKIGQYHCIVETSSKA 136


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 364 VIRELRTELCEVTSTSRAYYTGTFELENSPFCRR 263
           V+ E   EL E +S  R    G FEL  S  CRR
Sbjct: 639 VVGESECELSESSSCRRVRVVGEFELSESSSCRR 672


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -2

Query: 378 PNARSSSENCVRNSVKSLPR------PEHIIRAPSNLKTAHSVGEASDLTSSY 238
           P+ARSS E C+R ++  LP       P  +IRA   L+T  ++G+   +  SY
Sbjct: 504 PDARSSGEQCIR-TLSQLPEFTNGKLPSELIRA---LRTCRNLGDVYKVLFSY 552


>SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 191 KVTMTTGIDRDTIRAAYEDVRSDASPTEWAVFKFEG 298
           K+ +     R  ++  ++D+    S T WAVF +EG
Sbjct: 69  KMAIDLNKHRSELQKTWQDIFDGKSDTNWAVFGYEG 104


>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
          Length = 327

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 376 ECAFVIRELRTELCEVTSTSRAYYTGTF 293
           +C  V  + RT LCE+++T+R  Y G F
Sbjct: 37  KCQSVNYDQRTGLCEMSATNRHMYPGDF 64


>SB_13069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 212 IDRDTIRAAYE-DVRSDASPTEWAVFKFEGARIICSG--RGSDFTEFRTQFSD 361
           +D DTI   +E DV  + S  +     F+G   I  G  RG D+TEF T+F D
Sbjct: 266 LDFDTIEDRWEHDVWPNVSKNDHFA-TFDGIIDISVGKPRGDDYTEFVTRFRD 317


>SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)
          Length = 262

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 202 DHRYRPGYDTGGV*GREV*RLSYRMGCFQVR-RCPY 306
           + RY  GYDTG +      RL YR G  Q R RC Y
Sbjct: 80  ESRYNQGYDTGTIES----RLRYRHGPIQSRLRCSY 111


>SB_15897| Best HMM Match : DUF134 (HMM E-Value=7.5)
          Length = 311

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = -1

Query: 496 SLIRGHLGAVDDRHVRSDPRYEHEFLAFRHLVAHLQPQVTECAFVIRELRTELC-EVTST 320
           +L R H    D RHV   P+ +   LAF+H+   L   V E    +  LRT    E+   
Sbjct: 30  TLWREHEELYDLRHV-DYPKRDRRRLAFKHISEQLGITVPEIKKKMTNLRTYYTKEIWKE 88

Query: 319 SRAYYTGTFELENSPFCRRGVRPHVL 242
                 GT E    P+  R    H L
Sbjct: 89  RPGGKMGTDEPSKEPYISRWQHIHSL 114


>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1485

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 212 IDRDTIRAAYE-DVRSDASPTEWAVFKFEGARIICSG--RGSDFTEFRTQFSD 361
           +D DTI   +E DV  + S  +     F+G   I  G  RG D+TEF T+F D
Sbjct: 272 LDFDTIEDRWEHDVWPNVSKNDHFA-TFDGIIDISVGKPRGDDYTEFVTRFRD 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,980,912
Number of Sequences: 59808
Number of extensions: 417806
Number of successful extensions: 1191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)