Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A10
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    37   0.012
Z69790-1|CAA93654.2|  427|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   2.4  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   2.4  
Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    27   7.2  
AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    27   7.2  
Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    27   9.5  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    27   9.5  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +2

Query: 227 IRAAYEDVRSDASPTEWAVFKFEG----ARIICSGRGSDFTEFRTQFSDDERAFGYLRLQ 394
           I A+Y     D+   +W +F +EG     R+   G G    EF   FS  +  FG + ++
Sbjct: 12  IEASYRRASDDSDGDKWVIFDYEGNSNTLRVKEEGTGG-LEEFADSFSSGKLQFGVISVR 70

Query: 395 MGDEMSKRKKFMFVTWVGPNVSVINRA 475
           +  ++    K + V W G  V  +  A
Sbjct: 71  LSSDVF--PKIVLVHWQGEGVPTLRLA 95


>Z69790-1|CAA93654.2|  427|Caenorhabditis elegans Hypothetical
           protein F33C8.2 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 208 GGHRYFSWTILHNCFVFQTLRHCSHNNK 125
           G H +  W      F F T+ HCS N K
Sbjct: 152 GTHFFAFWVSFQIIFAFSTVAHCSQNRK 179


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 286  ENSPFCRRGVRPHVLIRRPYRIPVYT 209
            +  P  R+ VR H L+ RPY +PV T
Sbjct: 1912 QTKPSPRQDVRFHTLVLRPYTVPVTT 1937


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 286  ENSPFCRRGVRPHVLIRRPYRIPVYT 209
            +  P  R+ VR H L+ RPY +PV T
Sbjct: 1912 QTKPSPRQDVRFHTLVLRPYTVPVTT 1937


>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 278 AVFKFEGARIICSGRGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFVTWV 445
           A FKF G +II S R   FT++  +  +  RA G LR        +R+      W+
Sbjct: 155 AKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKWI 210


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 119 TVICTVFYFYKFFGIFTSFKSHSISYFV 36
           T+  T  ++Y++     ++K+H  SYFV
Sbjct: 105 TLYMTEIFYYRYQSCIFNYKTHKFSYFV 132


>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
 Frame = -1

Query: 490 IRGHLGAVDDRHVRSDPRYEHEFLAFRHLVAHLQPQVTECAFVIRELRTELCEVTSTSRA 311
           IR  L      H  ++ + EH+ L  RHL    + +  E  F    +  +  +V + ++ 
Sbjct: 549 IRAMLARKSTHHKEAE-KAEHDMLQ-RHLTGMEEREKVE-TFTTTCVEVKNVKVVTCNQC 605

Query: 310 YYTGTFELENSPFCRRGVRPHVLIRRPYRIPVYTGGHRYFSWTILHN---CFVFQTLRHC 140
            YT  F    S  C         I++ +++  +T   R+F  T       CF    ++HC
Sbjct: 606 KYTSQFA---SSEC---------IKKEHKLIKHTADKRFFKCTGCKKRTVCFEMMPVKHC 653

Query: 139 SHNNK 125
           +H N+
Sbjct: 654 AHCNE 658


>Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical
           protein T10B9.10 protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +2

Query: 353 FSDDERAFGYLRLQMGDEMSKRKKFMFVTWVGPNVSVINRAKMSTDKAIIKDLISNFCSR 532
           + DD   F   R + GDE+   K       +GP + +  R  M   K ++ +++ N+   
Sbjct: 429 WGDDVNEFKPERWESGDELFFAKGGYLPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFE 488

Query: 533 AT 538
            T
Sbjct: 489 TT 490


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
           protein 2, isoform b protein.
          Length = 2027

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 244 LIRRPYRIPVYTGGHRYFSW-TILHNCFVFQTLRHCSHNNKKS 119
           +IRR  +  +  G   YF   TI+ NC V    +H   N+KK+
Sbjct: 96  IIRRNAKAIIEWGPFEYFILLTIIGNCVVLSMEQHLPKNDKKA 138


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
           activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 244 LIRRPYRIPVYTGGHRYFSW-TILHNCFVFQTLRHCSHNNKKS 119
           +IRR  +  +  G   YF   TI+ NC V    +H   N+KK+
Sbjct: 96  IIRRNAKAIIEWGPFEYFILLTIIGNCVVLSMEQHLPKNDKKA 138


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 442 PRYEHEFLAFRHLVAHLQPQV 380
           P YE E LA R  +AHLQ ++
Sbjct: 571 PNYEPELLALRQQLAHLQSEL 591


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 442 PRYEHEFLAFRHLVAHLQPQV 380
           P YE E LA R  +AHLQ ++
Sbjct: 583 PNYEPELLALRQQLAHLQSEL 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,329
Number of Sequences: 27780
Number of extensions: 314579
Number of successful extensions: 792
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)