Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A10
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase, ...    31   0.73 
At1g59865.1 68414.m06743 expressed protein                             29   2.9  
At5g57280.1 68418.m07156 expressed protein                             28   3.9  
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu...    28   3.9  
At5g24740.1 68418.m02920 expressed protein                             27   9.0  
At2g20250.1 68415.m02366 hypothetical protein                          27   9.0  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    27   9.0  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    27   9.0  

>At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative 65% similar to
           geranylgeranyl pyrophosphate synthase [GI:413730];
          Length = 326

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 421 LAFRHLVAHLQPQVTECAFVIRELRTELCEVTSTSRAYYTGTFELENSPF 272
           LAF+H+V+H  P +   A ++R L TE+     ++        +LE  PF
Sbjct: 163 LAFQHIVSHTPPDLVPRATILR-LITEIARTVGSTGMAAGQYVDLEGGPF 211


>At1g59865.1 68414.m06743 expressed protein
          Length = 175

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 254 TSRPHTPPVSYPGLYRWSSLLFLDHSAQLFRIPNPPTLLS 135
           +S  H P V +  + + SS +FL H    F I +P TLL+
Sbjct: 92  SSSSHFPEVDFQQIIKSSSFIFLKHC--YFHITSPKTLLN 129


>At5g57280.1 68418.m07156 expressed protein
          Length = 289

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 413 KRKKFMFVTWVGPNVSVINRAKMSTDKAIIKDLISNFCSRATVGKSIRNRPRSIQ 577
           KRK+F+ +T  G   + I  +K   D++  +D  S+      VG S RNRPR  Q
Sbjct: 195 KRKEFLVLT-CGTVQTSIQTSKNEYDESCSEDDNSDDEESEEVGVSDRNRPRKRQ 248


>At4g38180.1 68417.m05390 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family and PF04434:
           SWIM zinc finger
          Length = 788

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
 Frame = -1

Query: 463 DRHVRSDPRYEHEFLAFRHLVAHLQPQVTECAFVIRELRTELCEVTSTSRAYYTGTFELE 284
           D   RS+ RY   F  F  +  H QP +  CAF+I E       + +T  A  +      
Sbjct: 303 DTTYRSN-RYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSA----- 356

Query: 283 NSPFCRRGVRPHVLIRRPYRIPVYTGG-HRYFSWTILHNC 167
           + P        H  + R   + V+ G  HR+  W IL  C
Sbjct: 357 HPPVSI--TTDHDAVIRAAIMHVFPGARHRFCKWHILKKC 394


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 537 VALLQKLEIKSLMIALSVDILARLMTDTFGPTHVTNMNFLRFDISS 400
           ++L  K+   S  I+ S    + L TDT  PT +   +F RF  S+
Sbjct: 797 ISLNCKVSQTSYKISSSYTNPSSLATDTIAPTEIPQFDFERFGFSN 842


>At2g20250.1 68415.m02366 hypothetical protein
          Length = 559

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/84 (25%), Positives = 30/84 (35%)
 Frame = -2

Query: 315 EHIIRAPSNLKTAHSVGEASDLTSSYAAXXXXXXXXXXXVTFLGPFCTIVSYSKPSDIAL 136
           E ++ A   L+T H    +  LT  Y               F  P C IVS+   S    
Sbjct: 467 EDVVAANQELQTFHHTNSSDCLTRDYTYYRNLSNSLVDHCPFKVPGCDIVSFPFSSISNS 526

Query: 135 TIIKNHSYMHSLLFL*IFWYIYQF 64
            +++  S   S  F    W  +QF
Sbjct: 527 NLLEASSPTTSNRFKSHDWIPFQF 550


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 495 ALSVDILARLMTDTFGPTHVTNMNFLRFDISSP 397
           A SVD + RL+  +  P H+  M+ L +DI  P
Sbjct: 342 ASSVDNMRRLVEHSGAPGHIYPMSLLCYDIMPP 374


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 495 ALSVDILARLMTDTFGPTHVTNMNFLRFDISSP 397
           A SVD + RL+  +  P H+  M+ L +DI  P
Sbjct: 342 ASSVDNMRRLVEHSGAPGHIYPMSLLCYDIMPP 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,059,808
Number of Sequences: 28952
Number of extensions: 286743
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)