Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A08
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   5.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   5.6  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   9.8  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 183  KNETLQRNQRAAVTASQPPKPGSHWLWCQWWWLEACFSSALA 58
            KN   QR   A + A    KP +     QWWW +     A++
Sbjct: 1671 KNGQFQRAFNAILKAMDLDKPLATIEHAQWWWHQGQHRKAIS 1712


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 518  KLFDDRSLKVLPXTIWIYIAYMQYRKHSIYKFTHMHI*FEIYYQC*NITTLIQY 357
            K +DD  LK +   I     Y    +  IY+   +   FE++  C +  TL  Y
Sbjct: 860  KFYDDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHRLCRSFPTLQSY 913


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 206 FINSYC-PFQLINYKL----AMSLSYDIRAT*HLKSFFF 307
           F+ S+  PF L  Y L    AM   Y I ++ HLK+ FF
Sbjct: 446 FLKSFAHPFHLERYHLHAVAAMGGLYQIMSSTHLKNLFF 484


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 216 LLIKKWKCGTDKNETLQRNQR 154
           LL+ KW   T KN+   RN+R
Sbjct: 84  LLVTKWFASTLKNQYAARNER 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,938
Number of Sequences: 5004
Number of extensions: 40173
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)