Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A08
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0061 - 4812903-4812940,4813140-4813536                           34   0.066
05_05_0040 + 21789322-21789734,21790429-21790459,21790730-217908...    30   1.4  
03_06_0225 - 32487592-32487710,32487860-32488325,32489124-324892...    30   1.4  
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471...    29   3.3  
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...    29   3.3  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    29   3.3  
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    27   10.0 

>10_02_0061 - 4812903-4812940,4813140-4813536
          Length = 144

 Score = 34.3 bits (75), Expect = 0.066
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 117 SHWLWCQWWWLEACFSSALAAVVG--LMV*RLAP 22
           + W W QWWWLEA   +  +  VG  + V RL P
Sbjct: 39  TRWRWRQWWWLEATRRANSSTAVGGSMAVGRLLP 72


>05_05_0040 +
           21789322-21789734,21790429-21790459,21790730-21790815,
           21791000-21791012
          Length = 180

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 201 WKCGTDKN--ETLQRNQRAAVTASQPPKPGSHWLWCQWWWLEACFSSA 64
           W+CG D +  ++   + R A  A +    G+ W    WWW E  +S+A
Sbjct: 29  WRCGGDSSCVDSTDGSGRLAPLACRGGFGGADWR--PWWWREYAWSAA 74


>03_06_0225 -
           32487592-32487710,32487860-32488325,32489124-32489237,
           32489375-32489602,32489773-32490009,32490490-32490594
          Length = 422

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 168 QRNQRAAVTASQPPKPGSHWLWCQWW 91
           Q  Q AA+TA QP K    W W + W
Sbjct: 230 QARQHAAITAFQPDKNSWGWNWLERW 255


>08_02_0958 -
           23044708-23046045,23046131-23046363,23047059-23047199,
           23047296-23048334
          Length = 916

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 135 QPPKPGSHWLWCQW 94
           +P K G HW WC W
Sbjct: 422 KPTKYGKHWCWCFW 435


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 135 QPPKPGSHWLWCQW 94
           +P K G HW WC W
Sbjct: 422 KPTKYGKHWCWCFW 435


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 452 QYRKHSIYKFTHMHI*FEIYYQC*NITTLIQYFAAPLLTPLPYKMFIRKKKN-FLNAMWP 276
           +Y K  +  FTH +  F+      NIT  ++ F APLL  LP +      KN +L  + P
Sbjct: 531 KYEKSPVVVFTHQY--FDERSSIDNITPQMKEFEAPLLAVLPERANGLTLKNIYLKLLEP 588

Query: 275 *YHTRAT 255
              +++T
Sbjct: 589 LRFSKST 595


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 454 CNIENTVFINLHTCIYNSKYTINVKISQL*SSTLQLHY*LPCPIKCL*EKKK 299
           C I  T   NLH+C +     + + ++    S    HY LPC I+   EK K
Sbjct: 399 CFIYLTNGSNLHSCNHTKIQALVLVVTSNPRSAGMYHYGLPCQIEGRNEKGK 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,829
Number of Sequences: 37544
Number of extensions: 230577
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)