Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A08
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036693-5|AAK29787.1|  434|Caenorhabditis elegans Hypothetical ...    30   0.96 
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    29   2.2  
AF036693-7|AAO61432.1|  343|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF036693-6|AAK29792.1|  428|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF099915-7|AAU05581.1|  468|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF099915-6|AAU05582.1|  471|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    27   6.8  
AC024843-3|AAF60838.1|  110|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF036693-5|AAK29787.1|  434|Caenorhabditis elegans Hypothetical
           protein C49A9.5 protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 192 GTDKNETLQRNQRAAVTASQPPKPGSHWLW 103
           G   ++T+   QRA VT+    +PG+++LW
Sbjct: 270 GFTTSQTIGEKQRAVVTSIDAKRPGTYYLW 299


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 111 WLWCQWWWLEACF 73
           W+W  +WW+E CF
Sbjct: 788 WVWSFFWWIENCF 800


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 111 WLWCQWWWLEACF 73
           W+W  +WW+E CF
Sbjct: 397 WVWSFFWWIENCF 409


>AF036693-7|AAO61432.1|  343|Caenorhabditis elegans Hypothetical
           protein C49A9.9b protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 192 GTDKNETLQRNQRAAVTASQPPKPGSHWLW 103
           G   ++T +  QRA VT+    +PG ++LW
Sbjct: 273 GFTTSQTKEEKQRAVVTSIDEKRPGLYYLW 302


>AF036693-6|AAK29792.1|  428|Caenorhabditis elegans Hypothetical
           protein C49A9.9a protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 192 GTDKNETLQRNQRAAVTASQPPKPGSHWLW 103
           G   ++T +  QRA VT+    +PG ++LW
Sbjct: 273 GFTTSQTKEEKQRAVVTSIDEKRPGLYYLW 302


>AF099915-7|AAU05581.1|  468|Caenorhabditis elegans Hypothetical
           protein E02H9.3a protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 192 GTDKNETLQRNQRAAVTASQPPKPGSHWLW 103
           G   ++T +  QRA VT     +PG ++LW
Sbjct: 313 GFTTSQTKEEKQRAVVTRIDEKRPGLYYLW 342


>AF099915-6|AAU05582.1|  471|Caenorhabditis elegans Hypothetical
           protein E02H9.3b protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 192 GTDKNETLQRNQRAAVTASQPPKPGSHWLW 103
           G   ++T +  QRA VT     +PG ++LW
Sbjct: 316 GFTTSQTKEEKQRAVVTRIDEKRPGLYYLW 345


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +1

Query: 406 YICMCVNL*ILCFLYCIYAIYIQIVHGNTFNDLSSNNFVLFSIFVHHLI 552
           +  +C+ + I  F+     +YI +     + + ++ NF LF I +H ++
Sbjct: 240 FFALCIQVFIPIFVLSFPVLYIVLAIWFNYYNQAATNFALFGIALHGIL 288


>AC024843-3|AAF60838.1|  110|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.7 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 210 IKKWKCGTDKNETLQRNQRAAVTASQPPKP 121
           +++ K   D+ E  +R +RAA++AS  P+P
Sbjct: 50  LQELKTAHDEFEAQRRGKRAAISASDKPEP 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,629
Number of Sequences: 27780
Number of extensions: 228422
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)