Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A07
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    26   3.5  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    26   4.6  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   4.6  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   6.1  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   6.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.0  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 432 CTQLSGTYNKSIALLTNGVLHDDQSQWVETRS 337
           C++L G  + S+ ++  GV  +D   W+E  S
Sbjct: 217 CSELCGVLHSSMPIVVQGVSLEDFLAWLEENS 248


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = -3

Query: 396 ALLTNGVLHDDQSQWVETRSSVCIIGLLCEPHVPAYVPFMG 274
           A L   ++   +++ V T S + ++ ++C+PH   ++   G
Sbjct: 63  AYLKESLMRKLRAKPVRTASGIAVVAVMCKPHRCPHIAMTG 103


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 78  QNVHNNEVVKDLPLPRYLWKVAKNSSRAERLSCAAALVALITCVGLIVYFTINAKDTSGT 257
           +NV    +VKD+   +Y+W   K + +   +S  A LVA       + ++  +  DT  T
Sbjct: 92  KNVTGQMIVKDML--QYIWPKGKTNLKVRVVSALALLVAAKILNVQVPFYFKSIIDTMNT 149

Query: 258 SI 263
           ++
Sbjct: 150 TL 151


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 380 PLVKSAIDLLYVPLSCVHYKLTSLERLATIFLTTS 484
           P + S+I L + P    H  LTS E +     TTS
Sbjct: 356 PNLNSSISLKFAPEDTAHNSLTSQENVGPQVTTTS 390


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 448 LRTLGYDIPYNFMIGNDGRVY 510
           L+TLG  IP+   +G +GRV+
Sbjct: 182 LQTLGSYIPFEIAVGMNGRVW 202


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 382 VSQECDRFIICAAELRTLQTYFLRTLGYDIPYNFMIGNDGRVYEGRGWGVLGAHT 546
           +S++    ++    L ++Q  FL +L     Y+F+ GN    Y   G+ +  AHT
Sbjct: 415 ISEQLISSLLNRCTLSSIQAVFLLSL-----YHFLTGNFKCAYSYLGFAIHSAHT 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,200
Number of Sequences: 5004
Number of extensions: 52832
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)