Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A07
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900...    32   0.38 
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611...    30   1.5  
07_03_0324 + 16803652-16803990,16804001-16804054,16804264-168042...    30   1.5  
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340...    29   2.7  
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672...    28   4.7  
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    28   4.7  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   4.7  
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958...    28   6.2  
11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103           27   8.2  
11_01_0158 + 1307648-1309462                                           27   8.2  

>04_02_0034 -
           8999618-9000358,9001439-9001618,9001666-9003621,
           9004647-9004786,9004871-9005282,9006399-9006638
          Length = 1222

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 11/21 (52%), Positives = 19/21 (90%), Gaps = 1/21 (4%)
 Frame = +1

Query: 115 PYHVICGKWRRIQ-AELKDYR 174
           PYH++ G+WR++Q AEL+++R
Sbjct: 212 PYHIVYGEWRKMQLAELEEWR 232


>12_02_0117 -
           13860418-13860524,13860612-13860810,13860969-13861148,
           13861230-13861375,13862185-13862323,13863076-13863153,
           13863654-13863722,13863806-13863925,13864792-13864875,
           13864961-13865032,13865204-13865345,13866016-13866023
          Length = 447

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 405 KSIALLTNGVLHDDQSQWVETRSSVCII 322
           KS+ L T+G L DD+S WV T SS+ ++
Sbjct: 241 KSVGLRTDGRL-DDRSYWVSTVSSISVL 267


>07_03_0324 +
           16803652-16803990,16804001-16804054,16804264-16804269,
           16804657-16804731,16804864-16804983,16806571-16806762,
           16806994-16807077,16807167-16807256,16807832-16807885,
           16808006-16808085,16808523-16808633,16808707-16808761,
           16808799-16808858
          Length = 439

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 41  RPSHRPKVRVRHSECAQQRSGQRFAPTTLSVESGEE 148
           RPS     R+R + CA+ R  +R AP  L+V + EE
Sbjct: 26  RPSAGAAPRLRGASCARGRQPRRRAPPPLAVAAAEE 61


>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
            3404071-3404562,3404718-3404821,3404913-3404994,
            3405085-3405441,3405532-3406089,3406376-3406479,
            3406575-3406650,3406764-3406898,3407192-3407494,
            3407581-3408345,3409459-3412591,3412763-3412882
          Length = 2445

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 292  LCSIHGVRKSMDVPEVSLAFIVK*TMRPTHV-INATRAAAHDNLS 161
            LC   G R+  ++    L+F +  T++P+H+ +NA      DNLS
Sbjct: 2352 LCQTSGRRRIDEISTKLLSFKISSTVKPSHIAMNAPSTKQVDNLS 2396


>12_01_0748 -
           6728221-6728305,6728788-6728842,6729202-6729289,
           6729681-6729818,6729978-6730142,6730235-6730354,
           6730555-6730631,6730738-6731113,6731523-6732617
          Length = 732

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 378 VLHDDQSQWVETRSSVCIIGLLCEPHVPAYVPFMGCENLWTCL 250
           +LH    +WVE   +  +         P  VPF+G   +W CL
Sbjct: 145 LLHHWSERWVELDDNPEMSSFCYYCDEPCGVPFLGVSPIWRCL 187


>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 507 HPSIVANHEVVRNIVAKRSKEVSL 436
           HP+++A HE +RNI+   + E SL
Sbjct: 80  HPNVIALHESIRNILLVANNENSL 103


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 293 AGTCGSQRRPIIQTELRVSTHCDWSSCN 376
           A TCG+Q RP IQ     STH   SS N
Sbjct: 769 AATCGAQFRPGIQAVDLTSTHVMGSSSN 796


>02_04_0240 -
           21194597-21194743,21195579-21195680,21195797-21195875,
           21195921-21196043,21196135-21196193,21196453-21196974,
           21197434-21198177,21198426-21198506
          Length = 618

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 141 AKNSSRAERLSCAAALVALITCVGLIVYFTINA-KDTSGTSIDFRTP*MEHKQEHVARRE 317
           A +S+R+  LSC + L  L + VG++ Y T  A K ++G ++  +   M  K  + +   
Sbjct: 492 APSSARSISLSCYSGLDVLSSSVGILPYKTAKAPKISNGNNVVVKQTEMMQKSRNGSHPA 551

Query: 318 G 320
           G
Sbjct: 552 G 552


>11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103
          Length = 404

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 56  PKVR-VRHSECAQQRSGQRFAPTTLSV 133
           PK+R +RH +   +RSG+R A   +SV
Sbjct: 309 PKLRPIRHKKAKDERSGKRLASEAISV 335


>11_01_0158 + 1307648-1309462
          Length = 604

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 350 SKRVVLSVLLAFSASHMFLLMFHSWGA 270
           S     S+L +FSASH   L+  +WGA
Sbjct: 65  SAAAAASLLASFSASHPLCLLLINWGA 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,174
Number of Sequences: 37544
Number of extensions: 362764
Number of successful extensions: 1063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)