Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A07
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13990| Best HMM Match : Ribosomal_L19 (HMM E-Value=4.1e-15)         28   4.8  
SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33)           27   8.4  
SB_16001| Best HMM Match : LRR_1 (HMM E-Value=0.035)                   27   8.4  
SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  

>SB_13990| Best HMM Match : Ribosomal_L19 (HMM E-Value=4.1e-15)
          Length = 267

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 57  PKFVSVTQNVHNNEVVKDLPLPRYLWKVAKN 149
           P       N H   + K  P+PRYLWK   N
Sbjct: 73  PSIYKTLPNAHTT-LEKSKPIPRYLWKETDN 102


>SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33)
          Length = 308

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 114 PLPRYLWKVAKNSSRAERLS-CAAALVALITCVGLIVYFTINAKDTSGTSI 263
           P P   ++  K     +R+S C +  + +I C+GLI YF+ +  + +  ++
Sbjct: 187 PPPTPSYQKPKFKPNTQRVSICRSQELRIIDCLGLITYFSFSRAEATNIAM 237


>SB_16001| Best HMM Match : LRR_1 (HMM E-Value=0.035)
          Length = 277

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 522 LGRPRCSHIHLQQMYI 569
           +G PRC+H++LQ+ YI
Sbjct: 207 VGLPRCTHLYLQRNYI 222


>SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/64 (18%), Positives = 32/64 (50%)
 Frame = +2

Query: 17  QPQRDQDYRPSHRPKVRVRHSECAQQRSGQRFAPTTLSVESGEEFKQS*KIIVCRCSCSI 196
           Q Q+ Q  +   + + + +  +  +Q+  Q+    T   +S  E++++ K  +  C C++
Sbjct: 63  QQQQQQQQQKQQQQQQQQQQQQQQRQQQQQQNGSFTKRNDSKYEYREAWKAQLADCHCTV 122

Query: 197 NHMC 208
            ++C
Sbjct: 123 YYLC 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,382
Number of Sequences: 59808
Number of extensions: 433681
Number of successful extensions: 1298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)