Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A07
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25250.1 68416.m03154 protein kinase family protein contains ... 30 1.3
At1g51805.1 68414.m05838 leucine-rich repeat protein kinase, put... 29 2.2
At4g17990.1 68417.m02677 hypothetical protein contains Pfam prof... 28 3.9
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI... 28 3.9
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 28 5.2
At1g19180.2 68414.m02388 expressed protein 27 6.8
At1g19180.1 68414.m02387 expressed protein 27 6.8
At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to ... 27 9.0
At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to ... 27 9.0
At3g26750.1 68416.m03346 expressed protein 27 9.0
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF... 27 9.0
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 27 9.0
At1g11190.1 68414.m01282 bifunctional nuclease (BFN1) identical ... 27 9.0
>At3g25250.1 68416.m03154 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 421
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1
Query: 539 APRTPQPRPSYTLPSLPIMK 480
APRTPQP PS + PS P MK
Sbjct: 175 APRTPQPSPSLSKPS-PTMK 193
>At1g51805.1 68414.m05838 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +3
Query: 18 NLNVTKTTGLHIGPKFVSVTQNVHNNEVVKDLPLPRYLWKVAKNSSRAERLSCAAALVAL 197
NLNV++ T I FV + H +E DL L LW S E + +L
Sbjct: 91 NLNVSRDTNYMIKATFVYGNYDGHKDEPNFDLYLGPNLWATVSRSETVEEIIHVTKSDSL 150
Query: 198 ITCV 209
C+
Sbjct: 151 QVCL 154
>At4g17990.1 68417.m02677 hypothetical protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 265
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 123 RYLW-KVAKNSSRAERLSCAAALVALITCVGLIVYFTINAKDTS--GTSIDFRT 275
R W +VA++ +LSC + IT V + Y T+ AKD S G+ + F+T
Sbjct: 83 REFWSRVAESQGTNLQLSCIEKCNSRITTVCIGYYITLVAKDPSAGGSLVTFQT 136
>At2g28390.1 68415.m03450 SAND family protein similar to Sand
(GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
SAND family protein
Length = 607
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = -3
Query: 480 VVRNIVAKRSKEVSL*CTQLSGTYNKSIALLTNGVLHDDQSQWVETRSSVCIIGLLCEPH 301
V+ +++ R K VSL Q + + + LL+N V+ + + E+ S +C+ +
Sbjct: 342 VLFSLLMCRHKVVSLAGAQKASLHPDDLLLLSNFVMSSESFRTSESFSPICLPRYNAQAF 401
Query: 300 VPAYVPF 280
+ AYV F
Sbjct: 402 LHAYVHF 408
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Frame = -3
Query: 495 VANHEVVRNIVAKR--SKEVSL*CTQLSGTYNKSIA--LLT---NGVLHDDQSQWVETRS 337
+ H +VRN+V + +V++ +L ++K+++ L+T +G +H +W+ T
Sbjct: 1638 MGKHVIVRNLVLEMLIDLQVTIKAEELLEQWHKTVSSKLITYFLDGAVHPSSMRWIMTLL 1697
Query: 336 SVCI 325
VC+
Sbjct: 1698 GVCL 1701
>At1g19180.2 68414.m02388 expressed protein
Length = 187
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 16 PTST*PRLPAFTSAQSSCPS---LRMCTTTK 99
PT+ PR P+F+S+ SS P L+M TT+
Sbjct: 20 PTNLFPRQPSFSSSSSSLPKEDVLKMTQTTR 50
>At1g19180.1 68414.m02387 expressed protein
Length = 253
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 16 PTST*PRLPAFTSAQSSCPS---LRMCTTTK 99
PT+ PR P+F+S+ SS P L+M TT+
Sbjct: 86 PTNLFPRQPSFSSSSSSLPKEDVLKMTQTTR 116
>At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to
aldehyde oxidase AAO1 from Arabidopsis thaliana
[gi:3172023] isoform contains a GA-donor splice site at
intron 10
Length = 1368
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +1
Query: 367 IVQHTVSQECDRFIICAAELRTLQTYFLRTLGYDIPYNFMIGNDGRVYEGRGW 525
I++ + +C + + A +L ++ F++ LG+ + F++ +DG V W
Sbjct: 1208 ILRTDIIYDCGKSLNPAVDLGQIEGAFVQGLGFFMLEEFLMNSDGLVVTDSTW 1260
>At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to
aldehyde oxidase AAO1 from Arabidopsis thaliana
[gi:3172023] isoform contains a GA-donor splice site at
intron 10
Length = 1368
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +1
Query: 367 IVQHTVSQECDRFIICAAELRTLQTYFLRTLGYDIPYNFMIGNDGRVYEGRGW 525
I++ + +C + + A +L ++ F++ LG+ + F++ +DG V W
Sbjct: 1208 ILRTDIIYDCGKSLNPAVDLGQIEGAFVQGLGFFMLEEFLMNSDGLVVTDSTW 1260
>At3g26750.1 68416.m03346 expressed protein
Length = 526
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 296 GTCGSQRRPIIQTELRVSTHCDWSSCNTPLVKSAIDLLYVPLSCVHYKLTSLERLATIFL 475
G C SQ P EL +S CN+ +VK + +Y+ L +L L A+ FL
Sbjct: 451 GLCSSQDEPGSALELSAIVKVLFSDCNSSVVKKIDEEVYI-LKGQGEELIELITNASKFL 509
Query: 476 TTS 484
+S
Sbjct: 510 PSS 512
>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
PF02984: Cyclin, C-terminal domain
Length = 1025
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 272 HPMNGT*AGTCGSQRRPIIQTELRVSTHCDWSSCNTPL---VKSAIDLLYVPLSCVHYKL 442
H NG GS I+ L+ S +S+ N PL V +++DLL L VH +L
Sbjct: 574 HSQNGMPEEERGSSTGEILD-RLKSSYRQAYSTWNQPLTSVVDNSVDLLNSELDVVHIRL 632
Query: 443 TS 448
+S
Sbjct: 633 SS 634
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 320 PIIQTELRVSTHCDWSS--CNTPLVKSAIDLLYVPLSCVHYKLTSL 451
P Q + +S C+ + L+K A+D+LY P SC+ L L
Sbjct: 64 PAAQALVNLSQKCELAKKMIQMGLIKVAMDMLYKPESCITRLLVML 109
>At1g11190.1 68414.m01282 bifunctional nuclease (BFN1) identical to
bifunctional nuclease bfn1 [Arabidopsis thaliana]
gi|4099831|gb|AAD00693
Length = 305
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Frame = -3
Query: 429 TQLSGTYNKSIALL--------TNGVLHDDQSQWVE 346
T L Y+K++ LL TNG+ HDD S W E
Sbjct: 194 TALKENYDKNLDLLQEDLEKNITNGLWHDDLSSWTE 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,371
Number of Sequences: 28952
Number of extensions: 285184
Number of successful extensions: 810
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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