Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A06
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    30   0.30 
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    28   0.92 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.8  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   4.9  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    26   4.9  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   6.5  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   8.6  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 227 GVYEDLLKEHIRRPRTPPHSARRSNG*PTSLLSITKASNG 346
           GVY  LL+ H + PR  P  A + N  P  L  + K   G
Sbjct: 76  GVYRQLLRWHAKLPRVQPFYAVKCNPDPKVLALLNKFGTG 115


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 298 GPASGVWGGAWTPN 257
           G A G WGG W PN
Sbjct: 324 GSAGGFWGGLWNPN 337


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 439 IWHAFKTFRHIRRNFSFRLITSMRSVNGQESSLKSENSFELR 564
           +W A K   HI  +  ++ +TS+   N   S  K+ + F  R
Sbjct: 851 VWSAAKQVHHIVSDGKYKFVTSLVEQNSSASPKKNYDDFLYR 892


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 39  IPGLQARVLFFFSLNKHLYFS*FPHKLNVCTLASTPHPHCP-RPSWAL 179
           IP   ++   F   N+  Y S   H  N  +++S P P CP  PS A+
Sbjct: 274 IPPTPSQFSAFMYQNQQSYLSPQSHYENPLSISSRPSPCCPSTPSSAV 321


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 521 PLTDLIEVIRRKEKFRRICLKVLN 450
           P+T  IE  ++ EK++R+CL+ L+
Sbjct: 658 PVTYSIEQEKKLEKYKRVCLRGLD 681


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 84  KHLYFS*FPHKLNVCTLASTPHPHCPRPSWAL 179
           K++Y +  P ++  C     P+P+CP  S+ L
Sbjct: 406 KNIYLAKRPTRVLHCEKTCKPNPYCPTCSFVL 437


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 173 GSRKVRGNVE-FVRKVLAFGVYEDLLKEHIRRPRTPP-HSARRSNG*PTSLLSITKASNG 346
           G  K    +E +V  V  FG + D+L  ++  P TP   + ++ +   T L ++    N 
Sbjct: 236 GKNKNGNEIEDYVEGVRTFGNFADILVINVSSPNTPGLRNLQKKSALSTLLTAVVSERNK 295

Query: 347 VRS 355
           + S
Sbjct: 296 LNS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,210
Number of Sequences: 5004
Number of extensions: 59686
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)