Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A06
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0129 + 1535823-1537196 31 0.94
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 30 1.2
08_02_1581 - 28004060-28004449,28004730-28004888,28004933-280050... 29 2.2
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 29 2.2
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 29 2.9
12_02_0304 + 17112677-17113195 29 3.8
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 28 5.0
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807... 28 6.6
03_05_0289 - 22778073-22778587,22780393-22780576 28 6.6
>10_01_0129 + 1535823-1537196
Length = 457
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 421 SWQHQSIWHAFKTFRHIRRNFSFRLITSMRS 513
SW+H + HAF RH RR F L+TS R+
Sbjct: 125 SWRHIASTHAF-LLRHHRRQPEFPLVTSFRN 154
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 335 ASNGVRSWLLDSNGYT-KTKNWNGYPPSVP----LGNINLFGMHSKPSDIYDGT 481
++NG R+WL+D N T K +W+ P +I+++ +H + +D T
Sbjct: 286 SANGTRTWLVDINSETLKPASWDELSDEKPNLESFSDISIYELHIRDFSAHDST 339
>08_02_1581 -
28004060-28004449,28004730-28004888,28004933-28005044,
28005160-28005236,28005525-28006076
Length = 429
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 251 EHIRRPRTPPHSARRSNG*PTSLLSITKASNGVRSWLLDSNG 376
EH + R H R P L + AS+ R W +D NG
Sbjct: 374 EHAGKERGSAHRRTRYACWPLRRLRVISASSSARKWFVDQNG 415
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 210 GKCSPSGYTKTSLKNILGVHAPPHTPLAGPMD 305
GK S Y+ +S+++++ + PP PL P+D
Sbjct: 30 GKLPKSSYSPSSIESLIKIAEPPVVPLYKPLD 61
>11_04_0094 +
13418604-13418680,13419331-13419400,13420078-13420236,
13420334-13420445,13420530-13420649,13422249-13422406,
13422987-13423217,13424621-13424713,13425088-13425227,
13426331-13426401,13427554-13427637,13427752-13427846
Length = 469
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 335 ASNGVRSWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIYD 475
+S+ SW L + K KNW NG ++ +G FG S P DI++
Sbjct: 35 SSSQFYSWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIHE 81
>12_02_0304 + 17112677-17113195
Length = 172
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 82 TNIFISVNFLTSLTFVHSHQPPTPTAHDPP 171
T IF++ L L+F + QP TP +PP
Sbjct: 7 TVIFLAAIILPFLSFAEAQQPQTPPRRNPP 36
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 274 PPTLRSPVQWIAHKLVINNKGLKWCPIMATRFKRIYENKELEWI 405
PPT R +WI H+ I+ + + CP M + K +WI
Sbjct: 121 PPTGRR-TEWIMHEYYIDERECQACPDMKDAYVLCRITKRNDWI 163
>07_03_0736 -
21079880-21080185,21080231-21080429,21080531-21080768,
21080888-21081098,21081181-21081320,21081400-21081537,
21086208-21087036
Length = 686
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 106 FLTSLTFVHSHQPPTPTAHDPPGL*KSKGE 195
FL L VH PP PTA P + GE
Sbjct: 247 FLNGLVMVHLTAPPIPTASPPAAAAAAAGE 276
>03_05_0289 - 22778073-22778587,22780393-22780576
Length = 232
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 319 QACGLSIGPASGVWGGAWTPN 257
+ACG +I P SG G WT N
Sbjct: 70 EACGRTINPVSGAIGLMWTGN 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,227,876
Number of Sequences: 37544
Number of extensions: 455856
Number of successful extensions: 1253
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -