Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A06
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)     28   5.1  
SB_13106| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)                 28   5.1  
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_2720| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)                  28   5.1  
SB_26667| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-22)                 28   6.7  
SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)         28   6.7  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       27   8.9  

>SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)
          Length = 636

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 138 STPHPHCP---RPSWALEK*GGTLNL*GKCSPSGYTKTSLKNILGVHAPPHTPLAG 296
           +T HP  P   +  WA  +  G +N+  +  P    K +L  IL VH+  HT L G
Sbjct: 313 ATSHPEHPGRLQSIWARLQETGVVNMCDRVRPR---KATLAEILSVHSEQHTMLFG 365


>SB_13106| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)
          Length = 365

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 264 RLICSLR-RSSYTPKASTFLTNSTFPLTFLEPRRVVGSGG 148
           +++C+   RS YTPK +  +   T  L+F+ P + + +GG
Sbjct: 127 KVVCTKHYRSIYTPKRTKAIIIGTALLSFIGPSQYLANGG 166


>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 100 VNFLTSLTFVHSHQPPTPTAHDPPGL*KS 186
           +NF     FV+++QPP PT  D P   +S
Sbjct: 276 MNFTPCYPFVNNYQPPPPTNQDWPATTRS 304


>SB_2720| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)
          Length = 365

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 264 RLICSLR-RSSYTPKASTFLTNSTFPLTFLEPRRVVGSGG 148
           +++C+   RS YTPK +  +   T  L+F+ P + + +GG
Sbjct: 127 KVVCTKHYRSIYTPKRTKAIIIGTALLSFIGPSQYLANGG 166


>SB_26667| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-22)
          Length = 326

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 243 RSSYTPKASTFLTNSTFPLTFLEPRRVVGSGG 148
           RS YTPK +  +   T  L+F+ P + + +GG
Sbjct: 135 RSIYTPKRTKLIIVGTTLLSFIGPSQYLANGG 166


>SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)
          Length = 350

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 308 PTSLLSITKASNGVRSWLLDSNGYTKTKNWNGYPPSVPLGNINLFGMH 451
           P+   +ITK++N    W L+       K+  GY  S  +  ++  GM+
Sbjct: 12  PSCYTAITKSANHFVIWSLNQGSCRNAKSGEGYQDSRSVWQMSTMGMY 59


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 173 PGGSWAVGVGG*CECTN 123
           PGGSW V     C+C N
Sbjct: 495 PGGSWGVNCSSKCDCIN 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,961,425
Number of Sequences: 59808
Number of extensions: 466162
Number of successful extensions: 1117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)