Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A06
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-5|CAA99924.2|  747|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin ...    28   4.5  
Z19158-3|CAA79572.2|  305|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF040661-3|AAG24226.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z75550-5|CAA99924.2|  747|Caenorhabditis elegans Hypothetical
           protein T22C1.7 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 310 GLSIGP-ASGVWGGAWTPNMFFKEVFVYPEGEHFPYKFNVPPYFSRAQEGRGQW 152
           G+  GP A G + GAW        V+ +P G  +  ++          E RG+W
Sbjct: 27  GVCTGPQAKGEYAGAWHYGFEVSGVYTWPSGNTYQGQWQNGKRHGLGIEQRGRW 80


>AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin
           protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 310 GLSIGP-ASGVWGGAWTPNMFFKEVFVYPEGEHFPYKFNVPPYFSRAQEGRGQW 152
           G+  GP A G + GAW        V+ +P G  +  ++          E RG+W
Sbjct: 27  GVCTGPQAKGEYAGAWHYGFEVSGVYTWPSGNTYQGQWQNGKRHGLGIEQRGRW 80


>Z19158-3|CAA79572.2|  305|Caenorhabditis elegans Hypothetical
           protein T23G5.6 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 205 CKESARLRGIRRPP*RTY*ASTHPPTLRSPVQWIAHKLVINNK 333
           C ++ R RG  R     Y     PPT+   ++W   ++ +N +
Sbjct: 154 CSDAKRRRGRPRKDEEAYRLEMTPPTMNEVIRWNPDRIDVNTR 196


>AF040661-3|AAG24226.1|  187|Caenorhabditis elegans Hypothetical
           protein W10G11.1 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 359 LLDSNGYTKTKNWNGYPPSVP 421
           LLD+     +KNWN YP  +P
Sbjct: 109 LLDARASECSKNWNPYPKEIP 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,703
Number of Sequences: 27780
Number of extensions: 352012
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)