Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A06
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin...    30   1.0  
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi...    29   1.8  
At3g17490.1 68416.m02234 F-box family protein similar to F-box p...    29   2.4  
At4g39760.1 68417.m05631 kelch repeat-containing F-box family pr...    29   3.2  
At1g11280.3 68414.m01295 S-locus protein kinase, putative simila...    28   4.2  
At1g11280.2 68414.m01294 S-locus protein kinase, putative simila...    28   4.2  
At1g11280.1 68414.m01296 S-locus protein kinase, putative simila...    28   4.2  
At5g01160.1 68418.m00020 e-cadherin binding protein-related cont...    28   5.5  

>At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine,
           PIR2:I46014
          Length = 452

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 177 EPRRVVGSGGGGLMRVYKR*ACEEIN*NKD 88
           EPRR V S GGG  R  KR + E ++ N+D
Sbjct: 214 EPRRFVSSNGGGGDRFEKRGSFESLSRNRD 243


>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 150 PHCPRPSWALEK*GGTLNL*GKCSPSGYTKTSLKNILGVHAPP 278
           PHC   S  L K G  L+   KCSP   ++TS++ +    + P
Sbjct: 17  PHCSSQSHCLYKNGDFLSDDSKCSPLSSSRTSVRWVFNSSSLP 59


>At3g17490.1 68416.m02234 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain and
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 388

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 496 ITSMRSVNGQESSLKSENSFELRTILFCPGVILC 597
           I  +    G+ SSL   N FE+  I  C G+ILC
Sbjct: 80  IDLLMEFKGKLSSLNDLNDFEISQIYPCDGLILC 113


>At4g39760.1 68417.m05631 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 369

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 301 WIAHKLVINNKGLKWCPIMATRFKRIYENKELEWISTFSTSWQ 429
           W   + V N     WC I   R+  IY NK   W+ T S  W+
Sbjct: 247 WKVTEAVFN---FSWCVIEKVRY--IYYNKNCWWLDTKSKDWR 284


>At1g11280.3 68414.m01295 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 808

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 272 TPPHSARRSNG*PTSLLSITKASNGVRSWLLDSNGYTKTKNWNG 403
           T P S  +  G  T L S  + S+ +   ++ S GY KT  +NG
Sbjct: 230 TSPFSLSQDVGNGTGLFSYLQRSSELTRVIITSEGYLKTFRYNG 273


>At1g11280.2 68414.m01294 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 820

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 272 TPPHSARRSNG*PTSLLSITKASNGVRSWLLDSNGYTKTKNWNG 403
           T P S  +  G  T L S  + S+ +   ++ S GY KT  +NG
Sbjct: 230 TSPFSLSQDVGNGTGLFSYLQRSSELTRVIITSEGYLKTFRYNG 273


>At1g11280.1 68414.m01296 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 830

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 272 TPPHSARRSNG*PTSLLSITKASNGVRSWLLDSNGYTKTKNWNG 403
           T P S  +  G  T L S  + S+ +   ++ S GY KT  +NG
Sbjct: 240 TSPFSLSQDVGNGTGLFSYLQRSSELTRVIITSEGYLKTFRYNG 283


>At5g01160.1 68418.m00020 e-cadherin binding protein-related
           contains weak similarity to E-cadherin binding protein
           E7 [Mus musculus GP|9622093|gb|AAF89617
          Length = 360

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 371 NGYTKTKNWNGYPPSVPLGNINLFGMHSKPS 463
           +G ++  +  GYPP  P+ N+N  G +  PS
Sbjct: 294 SGGSEQSSLLGYPPPSPMTNLNFQGSYPPPS 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,372
Number of Sequences: 28952
Number of extensions: 341763
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)