Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A05
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 30 0.29
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.51
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 29 0.67
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 27 2.0
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.7
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 2.7
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 3.6
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 4.7
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 8.3
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 473 HFLLSVCVVN*HVNYVQGETGEIYLDHRIIAEYVTVFQIENA 348
H LL CVVN NY+ + +++DH+I+ + ++I A
Sbjct: 517 HMLLKFCVVNIDQNYI-SSSRLVHVDHQILQDRSKYWKINQA 557
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 29.1 bits (62), Expect = 0.51
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 267 CRKTFDR--SSQSPPKSRPALCKVAEYRRARPFYKLCIQIQE*KFSKVKSFSDTTE 106
CRK F SS+S K P+ C Y +P Y + ++++ SKV TTE
Sbjct: 39 CRKCFRNAYSSESSGKVSPSRC--CFYNHKKPHYSVETEVKDVIISKVVELIKTTE 92
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 28.7 bits (61), Expect = 0.67
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +3
Query: 174 KMDALADILQPYKELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVMSV 353
K AL +++ YKEL + +T G F WD Q G PF GG+ +
Sbjct: 3 KAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQ----GPDGTPFEGGLYPAT 58
Query: 354 LNLKYGYILRDDTM 395
L Y L T+
Sbjct: 59 LKFPSDYPLGPPTL 72
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 350 AHNNTSEERHETDTPRAALLVYVPAYEAAGKHLTDRHNRRQRADQLFVR 204
A +NT + + P+ + A H T H++ QR+ Q FVR
Sbjct: 133 ASSNTQLTQQQQSLPQTNEHQRARTHSNANNHFTKTHHQGQRSHQRFVR 181
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 330 LGGIVMSVLNLKYGYILRDDTMIQVNLSGLALNIVYMLIY 449
L GI+ L L + Y+ R T + L G LNIV M+I+
Sbjct: 325 LAGIINVPLLLIFSYLTRYLTDRDIILLGCCLNIVCMVIH 364
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -1
Query: 306 SCCVACICPSI*SCRKTFDRSSQSPPKSRPALCKVAEYRRARPFYKLCIQIQE*KFSKVK 127
+C AC+ P + TF+ + ++ L K+ R + I++ SK++
Sbjct: 445 TCAKACV-PGV---SDTFEPVRSAAAEALGVLMKLVGERAINQYLSPLDDIRK---SKIR 497
Query: 126 SFSDTTEVNNKIPCEHSSIK 67
SF +T V K P + S +K
Sbjct: 498 SFYETATVKAKAPTKKSKVK 517
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 270 SCRKTFDRSSQSPPKSRPALCKVAEYRRARPFYKL 166
S T D SS+SPP K + +R +PF+ L
Sbjct: 464 SLASTVDESSRSPPLPEVESNKENDIKRKQPFHDL 498
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 389 YDDPSKSLRSRPEHSLHVNLLRIHSGESESV 481
YD S +RP H L ++L + SG S+SV
Sbjct: 532 YDIESMVASARPHHQLLPDILILESGFSKSV 562
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 410 EIYLDHRIIAEYVTVFQIENAHNNTSE 330
E+Y++H+ + +FQ+ N H SE
Sbjct: 225 ELYVEHQSKKRRLELFQLTNNHQKNSE 251
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 129 SLSKTFTPVFVYKVCKM 179
S SKT +PV+V +CKM
Sbjct: 500 SRSKTHSPVYVQDLCKM 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,770
Number of Sequences: 5004
Number of extensions: 56307
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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