Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A05
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 45 5e-05
01_05_0639 + 23873735-23873814,23873932-23874148,23874259-238744... 41 6e-04
01_05_0637 + 23860857-23860936,23861057-23861273,23861388-238615... 41 6e-04
09_02_0096 - 4221935-4222231 38 0.006
09_02_0106 + 4347024-4347536,4349619-4349700,4350499-4350747,435... 36 0.024
05_04_0372 + 20726103-20726139,20726266-20726302,20726953-207270... 31 0.91
01_06_0194 - 27368563-27370956 30 1.6
11_01_0395 + 2999855-2999920,3000605-3002191 29 2.8
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099... 28 6.4
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 28 6.4
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 27 8.5
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 27 8.5
03_06_0683 - 35522534-35522647,35523009-35523143,35523224-355233... 27 8.5
03_03_0011 - 13716864-13716968,13717102-13717153,13717588-137177... 27 8.5
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +3
Query: 204 PYKELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVMSVLNLKYGYILR 383
P+ G L I++ + + IYK +ST+G +P++ + ++L + Y +
Sbjct: 9 PWAFAFGLLGNIISFMTYLAPLPTFYRIYKSKSTQGFQSVPYVVALFSAMLWIYYALLKS 68
Query: 384 DD-TMIQVNLSGLALNIVYMLIYYAYTQEKVKVW 482
D+ +I +N +G + +Y+ +Y Y +K K++
Sbjct: 69 DECLLITINSAGCVIETIYIAVYLVYAPKKAKMF 102
>01_05_0639 +
23873735-23873814,23873932-23874148,23874259-23874420,
23876037-23876357
Length = 259
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/110 (21%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Frame = +3
Query: 210 KELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVMSVLNLKYGY-ILRD 386
+ +VG + +++ G + W I K++ P+L ++ +L + YG ++
Sbjct: 8 RNVVGIIGNVISFGLFLAPVPTFWRICKRKDVEEFKADPYLATLLNCMLWVFYGIPVVHP 67
Query: 387 DTMIQVNLSGLALNI--VYMLIYYAYT--QEKVKVWAQMGLAGAFSTAVI 524
++++ V ++G+ L + Y+LI++ Y+ ++++++ A +G+ F AVI
Sbjct: 68 NSILVVTINGIGLLVEGTYLLIFFLYSPNKKRLRMCAVLGVELVFMLAVI 117
>01_05_0637 +
23860857-23860936,23861057-23861273,23861388-23861549,
23862850-23863155
Length = 254
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/110 (22%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +3
Query: 210 KELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVMSVLNLKYGY-ILRD 386
+ +VG + +++ G S W I K++ P+L ++ +L + YG I+
Sbjct: 8 RNVVGIIGNVISFGLFLSPVPTFWRICKRKDVEQFKADPYLATLLNCMLWVFYGIPIVHP 67
Query: 387 DTMIQVNLSGLALNI--VYMLIYYAYT--QEKVKVWAQMGLAGAFSTAVI 524
++++ V ++G+ L + Y+ I++ Y+ ++++++ A +G+ F AVI
Sbjct: 68 NSILVVTINGIGLIVEGTYLFIFFLYSPNKKRLRMLAVLGVELVFMLAVI 117
>09_02_0096 - 4221935-4222231
Length = 98
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Frame = +3
Query: 210 KELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVMSVLNLKYGY-ILRD 386
+ +VG + ++ G S W I K++ + P+L ++ +L + YG I+
Sbjct: 8 RNVVGIVGNAISFGLFLSPVLTFWRIIKEKDMKYFKADPYLATLLNCMLWVFYGLPIVHP 67
Query: 387 DTMIQVNLSGLALNI--VYMLIYYAYTQEK 470
++++ V ++G+ L I VY+ I++ ++ +K
Sbjct: 68 NSILVVTINGIGLVIEAVYLTIFFLFSNKK 97
>09_02_0106 +
4347024-4347536,4349619-4349700,4350499-4350747,
4351594-4351646,4353064-4353159,4353289-4353423
Length = 375
Score = 35.9 bits (79), Expect = 0.024
Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +3
Query: 210 KELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVMSVLNLKYGY-ILRD 386
+ +VG + I++ G S + I K + + P+L ++ +L + YG I+
Sbjct: 8 RNMVGIVGNIISFGLFLSPVPTFYRIIKNKDVQDFKADPYLATLLNCMLWVFYGLPIVHP 67
Query: 387 DTMIQVNLSGLALNI--VYMLIYYAYTQEKVK 476
++++ V ++G+ L I VY+ I++ ++ +K K
Sbjct: 68 NSILVVTINGIGLVIEAVYLTIFFLFSDKKNK 99
>05_04_0372 +
20726103-20726139,20726266-20726302,20726953-20727048,
20728343-20728625,20728862-20728981,20729072-20729284
Length = 261
Score = 30.7 bits (66), Expect = 0.91
Identities = 20/113 (17%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +3
Query: 210 KELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVMSVLNLKYG--YILR 383
K L G ++ + S W I +++ST +P+ ++ +L+ YG ++
Sbjct: 6 KFLFGVSGNVIALFLFLSPVPTFWRIIRRKSTEDFSGVPYNMTLINCLLSAWYGLPFVSP 65
Query: 384 DDTMIQ-VNLSGLALNIVYMLIYYAYTQEKVKVWAQMGLAGAFSTAVIGYAQI 539
++ ++ +N +G + Y++++ + +GLA A ++ A +
Sbjct: 66 NNILVSTINGAGAVIETAYVVVFLVFASTHKTRLRTLGLAAAVASVFAAVALV 118
>01_06_0194 - 27368563-27370956
Length = 797
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 372 YILRDDTMIQVNLSGLALNIVYMLIYYAYTQEKVKVWAQMGLAGAFSTAVIGYAQI 539
++L DT L N I+Y +T EK VW A +S A GY+ +
Sbjct: 42 FLLSPDTTFSCGFHQLGTNAFTFSIWYTHTTEKTAVWT----ANPYSPANGGYSPV 93
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -2
Query: 389 IIAEYVTVFQIENAHNNTSEERHETDTPRAALLVYVPAYEAAGKHLTDR 243
+I+ +++ Q + N+TSEE T R L ++ EA G+H+T++
Sbjct: 71 LISRFISSLQ-QYYSNHTSEEDDRTRLQRILLRMHSVVEEAEGRHITNQ 118
>06_03_0705 -
23707987-23708295,23708532-23708573,23709772-23709957,
23710112-23710222,23710337-23710408,23710499-23710747,
23711052-23711135,23711271-23711456,23711540-23711764
Length = 487
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 249 RSSQSPPKSRPALCKVAEYRRARPFYKLCIQIQE*KFSKVKSF 121
R+SQS S+ A+C + Y PFY+L I+ S + +F
Sbjct: 149 RASQSLEDSKYAVCLLTAYFFCEPFYQLPIEAHIDSVSCIDTF 191
>01_05_0251 + 19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 303 TRGIGLMPF---LGGIVMSVLNLKYGYILRDDTMIQVNLSGLALNIVYMLIY 449
T+ + MPF L +MSV YG +L D + N G L ++ +++Y
Sbjct: 1003 TKSVEYMPFYLSLSMFLMSVSFFAYGVLLHDFFIYIPNGIGTVLGVIQLVLY 1054
>11_06_0227 + 21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 272 EAAGKHLTDRHNRRQRADQLFVRLQNIGERVHFTNFVYKYRSK 144
EAA +H+ + H R +R+ + E + ++FV++YR K
Sbjct: 893 EAAWRHMVNSHPNRPA-----IRVSRLEEFISLSHFVFQYRMK 930
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -2
Query: 383 AEYVTVFQIENAHNNTSEERHETDTPRAALLVYVPAYEAAGKHLTDRHNRRQRADQLFVR 204
AE T+ ++N +N +E T + ++ PA + G H+ R AD
Sbjct: 169 AENATLVTLKNKSSNARKECPGPITAKNMKEIHRPANQVHGSHILSTSPRGVAADSYQSN 228
Query: 203 LQN 195
LQN
Sbjct: 229 LQN 231
>03_06_0683 -
35522534-35522647,35523009-35523143,35523224-35523346,
35523640-35523741,35523884-35524090,35524634-35524748,
35524839-35525048,35525135-35525234,35525448-35525609,
35525737-35526073,35526472-35526678,35527284-35527736
Length = 754
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 132 VKSFSDTTEVNNKIPCEHSSIKTGTFHKLK 43
+K + T + NK+P HS +G H LK
Sbjct: 602 LKGITATYRMTNKLPVRHSPYVSGILHPLK 631
>03_03_0011 -
13716864-13716968,13717102-13717153,13717588-13717719,
13718289-13718491,13718584-13718695,13719308-13719474,
13720059-13720119,13720527-13720645,13720911-13720943
Length = 327
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 402 VNLSGLALNIVYMLIYYAYTQEKVKVWAQM-GLAGAFSTAVIGYAQI 539
VNLS A V +I Y TQ+++ ++ + G G S ++G QI
Sbjct: 102 VNLSTSACVFVTAIILYYITQQEIYLYTPLSGFYGVLSGFLVGIKQI 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,716,191
Number of Sequences: 37544
Number of extensions: 360114
Number of successful extensions: 1057
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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