Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A05
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.30 
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_43479| Best HMM Match : GLTT (HMM E-Value=0.66)                     28   5.0  
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)             28   5.0  
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   28   6.6  
SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10)                   28   6.6  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   28   6.6  
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                27   8.7  
SB_14942| Best HMM Match : DUF895 (HMM E-Value=6e-07)                  27   8.7  
SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35)                 27   8.7  

>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +3

Query: 213 ELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVMSVLNLKYGYILRDDT 392
           E++  LA ++TIG   SG   C  I        +  +PF+  ++  +L   YGY+  D T
Sbjct: 4   EILSWLAIVLTIGFFASGILACKRIIVSGDVGDVQFLPFVTTLMNCLLWTIYGYLKDDST 63

Query: 393 MIQVNLSGLALNIVYMLIYYAYTQEK 470
           +I VN  G  L +VY+L +  +++E+
Sbjct: 64  IIIVNFVGALLQVVYILCFLYFSRER 89


>SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +3

Query: 276 CWDIYKQRSTRGIGLMPFLGGIVMSVLNLK---YGYILRDDTMIQVNLSGLALNIVYMLI 446
           CW I+++       +   +G +++ + NL     G+I R+ T+   NL+G  +NIV+  +
Sbjct: 71  CW-IFQKLYLPASVIGGIVGLVILQLANLDPQVSGFIKRNFTLGWYNLAGFLINIVFSSL 129

Query: 447 YYAYTQEKVKV-WAQMG 494
           +       VKV W Q G
Sbjct: 130 FLGTKIPNVKVIWNQAG 146


>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 284 HIQATQHEGYRSHAVPRRYCYERSQFEIRLHTPR 385
           H+ A +H   R+    R Y Y      I +HTPR
Sbjct: 194 HVHAPRHANARTRTQTREYTYTHPDTRIHVHTPR 227


>SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = -2

Query: 359 IENAHNNTSEERHETDTPRAALLVYVPAYEAAGKHLTDRHNRRQRADQLFVRLQNIGERV 180
           +E  H+  +EE+ + +    AL      ++   K + D ++ R++A +L   ++NI  R+
Sbjct: 49  VEKEHDKYNEEKQQANQSEMALSEVKDMHK---KVIDDLNHNRKKARELRTEVENIAARL 105

Query: 179 HF 174
           H+
Sbjct: 106 HY 107


>SB_43479| Best HMM Match : GLTT (HMM E-Value=0.66)
          Length = 161

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 107 SVVSEKLFTFENFYS--CICIQSL*NGRARRYSATLQRA--GRLFGGDCDD 247
           S +S++LF+    +S  C CIQ+  +GRA    AT  RA  GR   G   D
Sbjct: 63  SYISQQLFSINRPFSQCCACIQNATDGRATDGRATDGRATDGRATDGRATD 113


>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
          Length = 370

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 424 RARPERFTWIIVSSRSM*PYFKLRTLITIPPRNGMRPIP 308
           R RP ++++I  SS+S  P + L +++T   R+   P+P
Sbjct: 94  RGRPTKYSYISRSSKSFTPQYDLISVLTQLERSIRPPVP 132


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 306  RGIGLMPFLGGIVMSVLNLKYGYILRDDTMI 398
            RGI L+P L  I+ S+LN +  Y L D  ++
Sbjct: 1266 RGITLLPSLSKILTSILNERLYYYLEDKGLL 1296


>SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10)
          Length = 463

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 401 LDHRIIA-EYVTVFQIENAHNNTSEERHETDTPRAALLVYVP 279
           LD R  +  YVT  +    +N+T  E  +  TPRA +L Y P
Sbjct: 414 LDRRCQSLNYVTSSKTCEINNSTRHESEDDVTPRAGVLYYEP 455


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -2

Query: 341 NTSEERHETDTP-RAALLVYVPAYEAAGKHLTDRHNRRQRADQLFVRLQNIGERVHFTN 168
           +  +ER  T  P   +   Y P  +A G    DRH     A + +   Q+  E  H TN
Sbjct: 402 SAEQERPTTSRPSHTSATEYYPDRQAPGHRTPDRHTHNNHAPESYPAAQHTPE--HLTN 458


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -2

Query: 359 IENAHNNTSEERHETDTPRAALLVYVPAYEAAGKHLTDRHNRRQRADQLFVRLQNIGERV 180
           +E  +N T+ E  +  T        VP      KHL  RH  R++  Q    + N GE +
Sbjct: 110 VETTYNTTNAENQDKQTAAT-----VPEDAKHEKHLESRHKEREKKKQ----IHNSGENL 160

Query: 179 HFTNF-VYKYRSKSFRK*RVSL 117
             T   V K   +S R  R +L
Sbjct: 161 AKTQIEVPKEVKESIRNARKTL 182


>SB_14942| Best HMM Match : DUF895 (HMM E-Value=6e-07)
          Length = 523

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
 Frame = +3

Query: 186 LADILQPYKELVGSLAAIVTIGQMFSGSFICWDIYKQRSTRGIGLMPFLGGIVM--SVLN 359
           L   L+  K+    L   +T+      +FI  D  K   T  +G+   +G I++   V +
Sbjct: 307 LVATLKHIKDRRMQLVLPITVFSGLEQAFIFGDFTKAFVTCSLGIHK-VGFIMICFGVTD 365

Query: 360 LKYGYILRDDTM----IQVNLSGLALNIVYMLIYYAYTQEKVKVW 482
             + YIL   T     + V +SGL +++  ++I  A+T +   VW
Sbjct: 366 AAFSYILGRLTQYTGRLAVFVSGLVVHLTVLIIMLAWTPDASLVW 410


>SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35)
          Length = 239

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 363 KYGYILRDDTMIQVN--LSGLALNIVYMLIYYAYTQE 467
           KYG  L+DD M++V   LS  A+ I Y + + A+ ++
Sbjct: 76  KYGLGLKDDLMLRVTKILSNTAIQIFYPVEHIAWARD 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,480,258
Number of Sequences: 59808
Number of extensions: 431447
Number of successful extensions: 1193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)