Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A04
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             206   1e-53
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.082
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         32   0.33 
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   5.4  
SB_9863| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         27   7.1  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   27   9.4  
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)                    27   9.4  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  206 bits (502), Expect = 1e-53
 Identities = 96/144 (66%), Positives = 116/144 (80%), Gaps = 16/144 (11%)
 Frame = +3

Query: 51  QKQATVFLNRKGGM----KRKDMRHSKNVGLGFKTP------------REAVEGTYIDKK 182
           QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REA+EGTYIDKK
Sbjct: 10  QKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDKK 69

Query: 183 CPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRD 362
           CPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ H SPCFRD
Sbjct: 70  CPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPCFRD 129

Query: 363 VEIGDIVTIGECRPLSKTVRFNVL 434
           + +GD++T+G+CRPLSKTVRFNVL
Sbjct: 130 IALGDLITVGQCRPLSKTVRFNVL 153


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 372 GDIVTIGECRPLSKTVRFNV 431
           GD+V I ECRPLSK  +FNV
Sbjct: 29  GDVVRIKECRPLSKMKKFNV 48


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = +3

Query: 192 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 371
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 372 GDIVTIGECRPLSKTVRFNVL 434
           GD V I E RPLS T R+ ++
Sbjct: 63  GDRVRIMETRPLSATKRWRLV 83


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 299 FRQVMEIIAPDNNCSLHFHFLNNA 228
           F+++   ++PD  CS++F F N A
Sbjct: 197 FQEIWTTVSPDGICSVNFEFYNGA 220


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 219 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 356
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_9863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 80  QGGHEKEGYETF*ECWS 130
           QGGH+  G + F ECWS
Sbjct: 44  QGGHKYVGIQFFAECWS 60


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 30  IRQRKRSQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKK-CPFTGNVS 206
           IR +  + K  T  ++RK   K+K+ +  KN+    K PR     T++  +     G V+
Sbjct: 213 IRMQALAMK-VTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVA 271

Query: 207 IRGRILTGVVQK 242
           +R R   G  Q+
Sbjct: 272 LRARARAGNAQR 283


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 289 TCLNTTDLRSDTGTCLFIYRLASGTWKSETSSQLASAG 402
           TC+ +   RS  GTC+   R  SG     TS +  S G
Sbjct: 572 TCVTSIRCRSGEGTCVTSIRCRSGEGTCVTSIRCRSGG 609


>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
          Length = 621

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 32  QTEKAFSETGDGVPQSQGGHEKE 100
           Q EK F    DG+P+ + G++KE
Sbjct: 395 QAEKFFEMETDGIPKKEDGNQKE 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,732,954
Number of Sequences: 59808
Number of extensions: 369335
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)