Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A04
(523 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 182 2e-46
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 176 6e-45
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 173 8e-44
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 38 0.005
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 37 0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 30 0.82
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 28 3.3
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 5.8
At4g26980.1 68417.m03882 expressed protein 27 7.7
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 27 7.7
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 182 bits (442), Expect = 2e-46
Identities = 88/132 (66%), Positives = 102/132 (77%), Gaps = 5/132 (3%)
Frame = +3
Query: 54 KQATVFLNRKGGMKRK-----DMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 218
KQ VFL+ K K K R KN+GLGFKTPREA+EGTYID+KCPFTG VSIRGR
Sbjct: 11 KQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGR 70
Query: 219 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGEC 398
IL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+ GD VTIG+C
Sbjct: 71 ILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQC 129
Query: 399 RPLSKTVRFNVL 434
RPLSKTVRFNVL
Sbjct: 130 RPLSKTVRFNVL 141
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 176 bits (429), Expect = 6e-45
Identities = 84/132 (63%), Positives = 99/132 (75%), Gaps = 5/132 (3%)
Frame = +3
Query: 54 KQATVFLNRKGGMKRK-----DMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 218
KQ VFL+ K K K R KN+GLGFKTPREA++G Y+DKKCPFTG VSIRGR
Sbjct: 11 KQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGR 70
Query: 219 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGEC 398
IL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+ GD + IG+C
Sbjct: 71 ILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQC 129
Query: 399 RPLSKTVRFNVL 434
RPLSKTVRFNVL
Sbjct: 130 RPLSKTVRFNVL 141
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 173 bits (420), Expect = 8e-44
Identities = 85/132 (64%), Positives = 99/132 (75%), Gaps = 5/132 (3%)
Frame = +3
Query: 54 KQATVFLNRK--GGMKRKDM---RHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 218
KQ VFL+ K G KR R KN+GLGFKTPREA++G YID KCPFTG VSIRGR
Sbjct: 11 KQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGR 70
Query: 219 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGEC 398
IL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+C
Sbjct: 71 ILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQC 129
Query: 399 RPLSKTVRFNVL 434
RPLSKTVRFNVL
Sbjct: 130 RPLSKTVRFNVL 141
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 37.5 bits (83), Expect = 0.005
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 228 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 404
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 405 LSK 413
LSK
Sbjct: 63 LSK 65
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +3
Query: 216 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 395
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 396 CRPLSK 413
RPLSK
Sbjct: 60 SRPLSK 65
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 216 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 395
+ + G V +T+ + L PKY R + + H P ++GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 396 CRPLSKTVRFNVL 434
RP+SKT F L
Sbjct: 109 SRPISKTKSFVAL 121
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 39 RKRSQKQATVFLNRKGGMKR-KDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGN 200
RKR + +A N GG KR K S + GLG K+ + + CPF N
Sbjct: 4 RKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKS--KPCTKFFSTSGCPFGDN 56
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 213 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 329
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 138 KTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQK 242
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 29 DQTEKAFSETGDGVPQSQGGHEKEGYET 112
DQ AF ETGDG+ ++KE Y++
Sbjct: 245 DQFLSAFKETGDGLSGLDVSNDKETYKS 272
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,201
Number of Sequences: 28952
Number of extensions: 247617
Number of successful extensions: 623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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