Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A03
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 28 0.95
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar... 27 1.3
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 1.7
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 2.9
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 5.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 5.1
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 8.9
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 25 8.9
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 8.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.9
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.9 bits (59), Expect = 0.95
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 67 LNSRNDHIHNGEGTATENRRAPPPPYVSVEAQPVNVGXTRPA 192
+ S+N H NG A N P+V+V A P N G + A
Sbjct: 1084 VTSKNGHSRNGSHAAHSNNVIGTQPHVNVSAVP-NTGNLKDA 1124
>SPAC23G3.07c |snf30||SWI/SNF complex subunit
Snf30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 40 YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVSVEAQPVNVG 177
YI M+G++ L ++ D +++ G + N P P +S ++G
Sbjct: 170 YITMQGANSLKAQQDLLNSFTGAPSNNSHNIPDPNLSQTFSATSMG 215
>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 256
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 112 WRFLLHCVYGRSLNSIYVSLPS*CTPLNNHYYTK 11
W L + G SLNS++ + S TP +N T+
Sbjct: 118 WAVFLGIIVGFSLNSVFTFIDSFATPSSNSTVTE 151
>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 158
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 191 QVLRLLHMLWYFPSENGMLDHR 256
+VLR H WY P ++ M+D R
Sbjct: 45 KVLRCSHCGWYEPVDSAMIDQR 66
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 37 VYIKMEG--SHKLNSRNDHIHNGEGTATENRRAPPPP 141
V +K EG +++ + N +++NG + + APPPP
Sbjct: 91 VAVKHEGISNNESSDENMNVNNGNLDSFSSSSAPPPP 127
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 127 APPPPYVSVEAQPVNVGXTRPASITTPTH 213
+PPPP V P TR + P+H
Sbjct: 925 SPPPPKVGETYHPPTASGTRVPPVQQPSH 953
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 124 RAPPPPYVSVEAQPVNVGXTRPASITTPT 210
+APP P S +A P+ V T P + PT
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAP-PVPIPT 1047
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 112 TENRRAPPPPYVSVEAQPVNVGXTRPASITTPTHAV 219
T + PP P + +A PV + S++TP +V
Sbjct: 1221 TPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSV 1256
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 475 TYPCLFLCTPTTSNIVNIKCNARNIINIEQNITKVKPKLRFSVLLF 338
TYP T + + + I N+ N KVKP +S LL+
Sbjct: 133 TYPLDIARTRLSIETAGLTSRSLAINNVANNSLKVKPLTLWSTLLY 178
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 180 YKASKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVC 284
Y AS Y C G +P +TG II ++ ++ C
Sbjct: 105 YTASSCTAIYECEGDYPARTGNEIIDEFDQLNLQC 139
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 145 VSVEAQPVNVGXTRPASITTPTHA 216
+SVE+QPV PA TT HA
Sbjct: 1 MSVESQPVEKISELPAGSTTVVHA 24
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 417 HLIFTILLVVGVHKNKHGYVQAYVI 491
HL+ + V V N+ G+V AYV+
Sbjct: 988 HLVSEGVFVEKVEANRRGFVSAYVV 1012
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,459
Number of Sequences: 5004
Number of extensions: 42623
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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