Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A03
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0399 - 20955319-20955838,20955939-20956201 29 1.7
03_06_0272 - 32775620-32776501 29 1.7
12_01_0627 + 5171131-5171516,5171869-5172074,5172533-5172597,517... 28 3.9
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 27 6.8
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 27 6.8
06_02_0265 - 13586552-13587985 27 6.8
06_02_0203 + 12986685-12988691 27 6.8
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349... 27 8.9
08_01_1053 - 10716970-10717474,10718259-10718323 27 8.9
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 27 8.9
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 27 8.9
>05_04_0399 - 20955319-20955838,20955939-20956201
Length = 260
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 88 IHNGEGTATENRRAPPPPY-VSVEAQ 162
+ G+G A N+ APPPP+ +SV A+
Sbjct: 130 LSGGDGIAASNKAAPPPPHPISVPAK 155
>03_06_0272 - 32775620-32776501
Length = 293
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 124 RAPPPPYVSVEAQPVNVGXTRPASITTPTHAVVFS 228
R PPPP +S EA VG T A+ T + VVF+
Sbjct: 22 RVPPPPPISSEASRATVG-TNGAASRTVSDLVVFA 55
>12_01_0627 +
5171131-5171516,5171869-5172074,5172533-5172597,
5173115-5173355,5173635-5174095
Length = 452
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 263 IITDDQASRFQRENTTACVGVVILAGLVXPTLTGCASTDT*GGGGARLFSVAVPSPLCIW 84
+ TD+ A + Q + A IL L + C ST+T GGA L P+P+C W
Sbjct: 47 LTTDELAGKIQATDGVAVDR--ILRFLASFDVVRC-STETSPDGGAALIRRYTPAPVCRW 103
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -2
Query: 248 QASRFQRENTTACVGVVILAGLVXPTLTGCASTDT*GGGGARLFSVAVPSPLCIWSFLEF 69
+ +R R C+ V++ + + G GGG ++VAVP+ L FL+
Sbjct: 454 ETARGDRNRLAGCLAVIVASSVATAAYWGLGGD----GGGWAAYAVAVPAWLAATLFLQL 509
Query: 68 NL 63
+
Sbjct: 510 RV 511
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Frame = +2
Query: 35 WCTSRWKAHIN*IQGTTIYTMEKEPP-------PRIGVHRHRLMYLLRRSLSTWGLQGQQ 193
WC W IN GTT + K P P I HR +L + + L W L +
Sbjct: 610 WCAKMWHMLINFFTGTTCRCVNKLLPARTFSFLPPIDAHRQKLYAICKDIL--WLLHRKG 667
Query: 194 VLRLLHMLW 220
+ L+ W
Sbjct: 668 LFDPLYYWW 676
>06_02_0265 - 13586552-13587985
Length = 477
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 139 AVAVHAYSRWRFLLHCVYGRSLNSIYVSLPS*CTPLNNHYYTKNV 5
AV HA S F+ HC + +L ++ +P C PL+ + V
Sbjct: 345 AVLQHA-STGAFVTHCGWNSTLEAVAAGVPMVCWPLDAEQWMNKV 388
>06_02_0203 + 12986685-12988691
Length = 668
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 94 NGEGTATENRRAPPPPYVSVEAQPVNVGXTRPASITTPTHAVV 222
+ E E+ APPPP +EA P+ + I+T VV
Sbjct: 430 SSEAEQHEHNTAPPPPPPLIEALPLFTAASLLLEISTRAEGVV 472
>08_02_1138 +
24631919-24632248,24634100-24634502,24634788-24634982,
24635384-24635838,24636119-24636349,24636891-24637123,
24637899-24637971
Length = 639
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 221 TTACVGVVILAGLVXPTL-TGCASTDT*GGGGARLFSVAVP 102
T C G ++ GL P+L G A GG A L + A+P
Sbjct: 408 TALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAELINSAIP 448
>08_01_1053 - 10716970-10717474,10718259-10718323
Length = 189
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 249 SSIPFSEGKYHSMCRSRNTCWPCXPHV 169
S +PFSE Y S+C + C P H+
Sbjct: 43 SDVPFSE-VYKSICEGTSACGPVWDHI 68
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 103 GTATENRRAPPPPYVSVEAQPVNVGXTRPAS 195
G +N R PPPP PV+ G PA+
Sbjct: 796 GRVHDNNRKPPPPPAQGRLCPVHRGVCSPAT 826
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 118 NRRAPPPPYVSVEAQPVNVGX--TRPASITTPTH 213
N APPPP + QP G T PA+I+T H
Sbjct: 153 NFAAPPPPTQQQQQQPSGDGGLPTFPANISTLVH 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,927
Number of Sequences: 37544
Number of extensions: 279161
Number of successful extensions: 980
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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