Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A03
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical... 31 0.65
Z81112-5|CAB03276.1| 245|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81027-4|CAB02689.1| 245|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 29 2.0
Z81468-4|CAB03877.1| 394|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL021181-1|CAA15983.1| 394|Caenorhabditis elegans Hypothetical ... 29 2.6
AF125958-1|AAD14729.1| 342|Caenorhabditis elegans Serpentine re... 27 6.0
Z81142-8|CAO82053.1| 370|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69646-6|CAD44142.1| 287|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69646-5|CAA93474.1| 288|Caenorhabditis elegans Hypothetical pr... 27 8.0
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 27 8.0
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 27 8.0
>AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical
protein W10G11.6 protein.
Length = 426
Score = 30.7 bits (66), Expect = 0.65
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = +1
Query: 127 APPPPYVSVEAQPVNVGXTRPASITTPTHAVV 222
A PPP V A PV V T PA + PT AVV
Sbjct: 51 AAPPPVVVTTAPPVVV-VTTPAPVVVPTPAVV 81
>Z81112-5|CAB03276.1| 245|Caenorhabditis elegans Hypothetical
protein AH10.2 protein.
Length = 245
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 378 VIFCSILMIFLALHLIFTILLVVGV--HKNKHGYVQ 479
VI CS+L++ + + LI I++ + + H KH Y+Q
Sbjct: 169 VIHCSVLIVIIIVLLILIIIVYIFLRPHHQKHVYIQ 204
>Z81027-4|CAB02689.1| 245|Caenorhabditis elegans Hypothetical
protein AH10.2 protein.
Length = 245
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 378 VIFCSILMIFLALHLIFTILLVVGV--HKNKHGYVQ 479
VI CS+L++ + + LI I++ + + H KH Y+Q
Sbjct: 169 VIHCSVLIVIIIVLLILIIIVYIFLRPHHQKHVYIQ 204
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 327 YMDPNNNTEKRNLGLTLVIFCSILMIFLA 413
+MD NN +EK +G+T ++ S +++ LA
Sbjct: 284 FMDINNRSEKFTVGMTNIMSMSFILVILA 312
>Z81468-4|CAB03877.1| 394|Caenorhabditis elegans Hypothetical
protein Y54G11B.1 protein.
Length = 394
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 368 LNFGDILLYINDISC-VAFDIYNITSSRCAQ 457
LN D+L ++ I+C VAF +Y+ TSSR Q
Sbjct: 297 LNLADVLDLLSLINCYVAFLVYSFTSSRYRQ 327
>AL021181-1|CAA15983.1| 394|Caenorhabditis elegans Hypothetical
protein Y54G11B.1 protein.
Length = 394
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 368 LNFGDILLYINDISC-VAFDIYNITSSRCAQ 457
LN D+L ++ I+C VAF +Y+ TSSR Q
Sbjct: 297 LNLADVLDLLSLINCYVAFLVYSFTSSRYRQ 327
>AF125958-1|AAD14729.1| 342|Caenorhabditis elegans Serpentine
receptor, class j protein9 protein.
Length = 342
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 393 ILMIFLALHLIFTILLVVGVHKNKHGYV 476
I IF L+ I IL +G+ NKHG+V
Sbjct: 47 IFAIFDILYSISEILTPIGITGNKHGFV 74
>Z81142-8|CAO82053.1| 370|Caenorhabditis elegans Hypothetical
protein ZK1037.13 protein.
Length = 370
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 374 FGDILLYINDISCVAFDIYNIT 439
FG++LL +N + C YN T
Sbjct: 328 FGEVLLLVNSVRCAVILFYNYT 349
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 339 NNNTEKRNLGLTLVIFCSILMIFLA 413
++ TEK NLG+T ++ SILM+ ++
Sbjct: 296 DDRTEKINLGITTLLAMSILMLMVS 320
>Z69646-6|CAD44142.1| 287|Caenorhabditis elegans Hypothetical
protein F57C7.3b protein.
Length = 287
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 46 KMEGSHKLNSRNDHIH-NGEGTATENRRAPPPPYVSVEAQPVNVGXTRPASITTPTHAVV 222
++EGS + R I NG G T++ V +P + T+ +T+P+HAVV
Sbjct: 51 EVEGSANIPGRLADIEVNGSGYPTDDEDGDD---VHGSGKPPSSATTKSDKVTSPSHAVV 107
>Z69646-5|CAA93474.1| 288|Caenorhabditis elegans Hypothetical
protein F57C7.3a protein.
Length = 288
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 46 KMEGSHKLNSRNDHIH-NGEGTATENRRAPPPPYVSVEAQPVNVGXTRPASITTPTHAVV 222
++EGS + R I NG G T++ V +P + T+ +T+P+HAVV
Sbjct: 52 QVEGSANIPGRLADIEVNGSGYPTDDEDGDD---VHGSGKPPSSATTKSDKVTSPSHAVV 108
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 339 NNNTEKRNLGLTLVIFCSILMIFLA 413
++ TEK NLG+T ++ SILM+ ++
Sbjct: 296 DDRTEKINLGITTLLAMSILMLMVS 320
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 339 NNNTEKRNLGLTLVIFCSILMIFLA 413
++ TEK NLG+T ++ SILM+ ++
Sbjct: 296 DDRTEKINLGITTLLAMSILMLMVS 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,104,627
Number of Sequences: 27780
Number of extensions: 243958
Number of successful extensions: 926
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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