Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A03
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    31   0.46 
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-...    30   0.80 
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati...    28   4.3  
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER...    27   5.7  
At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase, ...    27   7.5  
At3g51340.1 68416.m05620 aspartyl protease family protein contai...    27   9.9  
At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.9  

>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 339 NNNTEKRNLGLTLVIFCSILMIFLALHLIFTILLVVGVHKNKHGYVQAYV 488
           N  T K  L LTL++ CSI  +FL L+  FTI     + +        YV
Sbjct: 27  NRETVKLTL-LTLLLLCSICFLFLTLNFPFTIEFTASIPRTCDHNFTVYV 75


>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
           domain-containing protein-related contains weak hit to
           Pfam F00627: UBA/TS-N domain; supported by tandem
           duplication of ubiquitin-associated (UBA)/TS-N domain
           protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
           thaliana]
          Length = 508

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 109 ATENRRAPPPPYVSVEAQPVNVGXTRPASITTP 207
           A  N+ +P PP ++VE+ PVN      AS+TTP
Sbjct: 55  ACRNQTSPFPPSLTVESTPVNANS---ASLTTP 84


>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
           similar to UDP-glucose glucosyltransferase GI:3928543
           from [Arabidopsis thaliana]
          Length = 489

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 106 FLLHCVYGRSLNSIYVSLPS*CTP 35
           FL HC +  +L S+Y  +P  C P
Sbjct: 377 FLTHCGWNSTLESLYAGVPMICWP 400


>At4g05310.1 68417.m00809 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 415

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 88  IHNGEGTATENRRAPPPPYVSVE 156
           IHN +    +  ++PP P++SVE
Sbjct: 79  IHNNDDQIPQTEQSPPAPWISVE 101


>At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to
           gi:1944371; contains GB:L22347
          Length = 372

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 381 IFCSILMIFLALHLIFTIL 437
           IF  +L++FL+LH +FT L
Sbjct: 6   IFLYLLIVFLSLHFVFTTL 24


>At3g51340.1 68416.m05620 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 518

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 127 APPPPYVSVEAQPVNVGXTRPASITTP 207
           +PPPP   +EA P +V    PA+  TP
Sbjct: 457 SPPPP--EIEAPPPSVSTPPPAASATP 481


>At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 106 FLLHCVYGRSLNSIYVSLPS*CTPLNNHYYT 14
           F  HC +   L S++  LP  C PL    +T
Sbjct: 366 FFTHCGWNSILESVWCGLPLLCYPLLTDQFT 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,216,103
Number of Sequences: 28952
Number of extensions: 221017
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)