Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A01
(262 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 31 0.17
12_02_0216 + 15804110-15804284,15804341-15804351 30 0.29
10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193 29 0.51
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 27 1.6
12_01_0495 - 3935395-3937110 27 2.7
07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614... 27 2.7
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668... 27 2.7
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 27 2.7
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 2.7
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 2.7
07_01_0601 + 4464745-4465010,4465274-4466582 26 3.6
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 26 3.6
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 26 3.6
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 26 4.8
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 26 4.8
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 26 4.8
04_01_0072 - 784922-785567,785673-786406 26 4.8
05_07_0334 - 29358823-29360247 25 6.3
05_05_0330 + 24137188-24137619 25 6.3
03_05_0517 - 25118232-25118730,25119002-25119273 25 6.3
02_01_0406 - 2958933-2962076 25 6.3
09_02_0234 - 6116931-6117052,6117549-6118369,6118573-6118601,611... 25 8.4
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 25 8.4
04_01_0536 - 6965343-6965537,6966407-6966595 25 8.4
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826... 25 8.4
02_05_0237 + 27095817-27097433 25 8.4
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 30.7 bits (66), Expect = 0.17
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 56 VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 196
V+ V + +PG +++N+G S GN ++ N PFF SNG
Sbjct: 41 VYDVTSYVEEHPGGDEILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.9 bits (64), Expect = 0.29
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 116 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 238
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193
Length = 246
Score = 29.1 bits (62), Expect = 0.51
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 130 RWNTT--IVHHVNLAWIIIRVMIDHVHSVCGSHGQYGEEEKHE 8
RWNTT ++H + II V ID +H + G+E +H+
Sbjct: 128 RWNTTYLMLHQLKGYEKIISVFIDSLHFRSNDTDEDGDENRHD 170
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 68 DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 232
DH+ D + V+ D+S VP D + D + DP + EP+S P
Sbjct: 40 DHSDDSDSAAVNEDDDSAVPEDAD-DETLAGAEDPVLDLREAEVLPSAEPVSAFP 93
>12_01_0495 - 3935395-3937110
Length = 571
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 68 DHNPDYNPGQVHVVDNSGVPSDGNSD--HVVIANPDP 172
DH Y+ HVVD P G D HV +A P P
Sbjct: 342 DHYLGYHSHDAHVVDAEATPEQGYHDDAHVAVA-PAP 377
>07_03_0380 +
17460078-17460782,17461194-17461252,17461388-17461492,
17461732-17461867,17461919-17461939
Length = 341
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 59 HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIA 160
H+V+ P + G+ V + VP DG +H+V++
Sbjct: 282 HIVERKP-FRCGRYPPVVRTAVPVDGRFEHIVLS 314
>04_03_0961 +
21263735-21263773,21264157-21264279,21266774-21266847,
21266939-21267095,21267554-21267694,21267739-21267823,
21268810-21268903,21269041-21269239,21269515-21269549,
21270076-21270631,21270722-21270882,21271704-21271718,
21273078-21273330,21273439-21273562,21273688-21273788,
21274870-21274938,21275060-21275191,21275270-21275404,
21275489-21275551,21275636-21275881,21276007-21276285
Length = 1026
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/54 (20%), Positives = 24/54 (44%)
Frame = +2
Query: 62 VVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPIS 223
++ P+ G + + N+G+P +S N +P + + N EP++
Sbjct: 340 LIKDEPNTQDGNNNTIQNTGIPIIASSSEFTPMNVEPSIASSNEFTPMNVEPLN 393
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 71 HNPDYNPGQVHVVDNSGVPSDG---NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 235
H Y PG V+ + GVP G S V I P P S+ P+ Y+P + PA
Sbjct: 83 HQGAYQPGGVYRAPSPGVPVIGGYARSTPVTIRAPPP---SHSSAPA-PYQPAAAAPA 136
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 104 VVDNSGVPSDGNSDHVVIANPDPFFSQP 187
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 116 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 226
SG PS GN+ + ++P PF S PS+G SGNY + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 140 SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 235
SDH V+ P PF P++ + + PI T PA
Sbjct: 50 SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 115 IVHHVNLAWIIIRVMIDHVHSV 50
++ NL W IIRV +DH H +
Sbjct: 482 VISKRNLIWRIIRVNLDHNHKM 503
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 104 VVDNSGVPSDGNSDHVVIANPDPFFSQP 187
V++N +P N HV++ANP P P
Sbjct: 240 VLENCQLPHP-NHGHVILANPSPILCYP 266
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 74 NPDYNPGQVHVVDN--SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFV 241
NP + +V +N + V D + V P P ++P G G +P + P F+
Sbjct: 521 NPMFQSATSYVRENRRASVVWDQEAGRYVSVAPAPATARPGGGGGGAEQPAARAPPFL 578
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 68 RPRALCLRQPWPIRRRRKTRK 6
R +CL PWP RRR +R+
Sbjct: 115 RASGVCLVFPWPARRRCPSRR 135
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 115 IVHHVNLAWIIIRVMIDHVHSV 50
++ NL WII R+ +DH H +
Sbjct: 505 VISERNLEWIITRLDLDHNHEL 526
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 173 FFSQPSNGP--SGNYEPISTGPAFVD 244
FFS+PS GP SGN++ + +D
Sbjct: 66 FFSRPSKGPTVSGNFDYLPCSSCIID 91
>05_07_0334 - 29358823-29360247
Length = 474
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 91 WIIIRVMIDHVHSVCGSHGQYG 26
W +R M+ CGS GQYG
Sbjct: 417 WECLRSMVRTFEDQCGSLGQYG 438
>05_05_0330 + 24137188-24137619
Length = 143
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 77 GYDRPRALCLRQPWP 33
G RP LC R PWP
Sbjct: 78 GVVRPSPLCARTPWP 92
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 167 DPFFSQPSNGPSGNYEPISTGPAFVDFNHP 256
D FF++ P GN T P VD P
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDP 66
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 155 IANPDP-FFSQPS-NGPSGNYEPISTGPAFVDFNHPNY 262
IA+ DP F P NGPS Y ++ P ++ +H N+
Sbjct: 528 IAHLDPGAFELPVYNGPSFQYRTLTGFPTLLNLSHNNF 565
>09_02_0234 -
6116931-6117052,6117549-6118369,6118573-6118601,
6118711-6119020,6119469-6119476,6120104-6120232,
6120341-6120445
Length = 507
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 68 DHNPDYNPGQVHVVDNSGVPSDGNSDH 148
+ N DYNP + V D+ S ++DH
Sbjct: 273 EDNIDYNPEMIGVADDQHSISSDDTDH 299
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 74 NPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFS--QPSNGPSGNYEPISTG 229
+P Y+P S S S + P P +S P+ PSG+Y P + G
Sbjct: 1780 SPTYSPTSPSYSQPSPSYSP-TSPYTTSGGPSPDYSPTSPNYSPSGSYSPTAPG 1832
>04_01_0536 - 6965343-6965537,6966407-6966595
Length = 127
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 191 NGPSGNYEPISTG 229
NGP+GNYE I G
Sbjct: 102 NGPTGNYEGIGAG 114
>03_02_0721 -
10677286-10678018,10679293-10679373,10682516-10682645,
10682969-10683101
Length = 358
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 128 SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 232
SD V+ +P+ SQP+NG SG GP
Sbjct: 213 SDEARSGSVVVDPEEPSSQPNNGSSGGGGGTPDGP 247
>02_05_0237 + 27095817-27097433
Length = 538
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = -3
Query: 146 GHYCRPMEHHYCPPREPGLDYNQGY---DRPRALCLR 45
GH HH PPR P L + G RPR L R
Sbjct: 20 GHRIEVKSHHASPPRLPLLPRSPGLTLASRPRMLPAR 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,124,720
Number of Sequences: 37544
Number of extensions: 171287
Number of successful extensions: 453
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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