Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P24
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0114 - 857835-859464,860403-860444,860530-860537                 29   2.9  
02_05_0459 + 29217728-29217919,29218095-29218190,29219785-292198...    28   5.0  

>02_01_0114 - 857835-859464,860403-860444,860530-860537
          Length = 559

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 195 LPSQVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSI 70
           + S V WT+L    V   QP+ +  + G M +E   P +++I
Sbjct: 227 MKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITI 268


>02_05_0459 +
           29217728-29217919,29218095-29218190,29219785-29219895,
           29219984-29220293,29220745-29220835,29220976-29221285,
           29221469-29221617,29221914-29222418
          Length = 587

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 460 G*NS*WHSELKR*NRLWRILWITMNFLRPSAYNLNGFMVIKVCKL 594
           G NS W S LK+  +  ++  I+ + LR +A  +NGF   ++ KL
Sbjct: 499 GKNSFWDSLLKKQRQKIQVKDISDDLLREAARKINGFSGREIAKL 543


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,412
Number of Sequences: 37544
Number of extensions: 297657
Number of successful extensions: 665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)