Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P23
         (531 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   2.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.9  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 97  PAYPPPLEWTLLNVLKRTCGRNNRYFRYPL 8
           P YP       L+   RT  +NNR   YP+
Sbjct: 241 PIYPAVTATVQLSTCTRTTLKNNRASPYPM 270


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 529 PKCSIRSRKDVAPNKKTNYRPLNVRYLNE 443
           P+  +R R+D AP +   ++PL   Y ++
Sbjct: 211 PEKHLRLRRDTAPPQWYQHQPLLFTYTDD 239


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -2

Query: 347 IPSTDPTNLKLGNRYIL*KLYTLGKDFWKFH 255
           +P    T     N Y++ +L      FW FH
Sbjct: 640 LPPAKDTIAVPNNGYVVLRLRANNPGFWLFH 670


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,921
Number of Sequences: 336
Number of extensions: 2386
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)