Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P23
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1720 + 39421381-39421444,39422424-39422601,39422812-394229...    29   3.1  
11_05_0056 + 18698795-18698813,18699353-18699936                       28   4.1  
01_06_1266 - 35865046-35866395                                         28   5.4  
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428...    27   7.1  
01_01_1004 - 7944214-7944227,7944641-7945769                           27   7.1  

>01_06_1720 +
           39421381-39421444,39422424-39422601,39422812-39422980,
           39423101-39423170,39423259-39423487,39425130-39425340
          Length = 306

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 71  PL*GGGVSRAFSRDA*ICGRREPFVKMDTVN*NKKKIRHIHHFVAKIFIIHLNKLSLI 244
           P   G + R  SRD  +    +  +  DTV   K+ +RH H F+  + +I  + L L+
Sbjct: 245 PFCRGSLKRVRSRDLWVLTGDDDVI--DTVTLEKENVRHFHSFIDSLPLIVPDNLLLV 300


>11_05_0056 + 18698795-18698813,18699353-18699936
          Length = 200

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 104 KMPGLPPPLRVDATECS*KD 45
           ++ GLPPP+ +  TEC  KD
Sbjct: 27  RLVGLPPPIHITMTECLVKD 46


>01_06_1266 - 35865046-35866395
          Length = 449

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 351 ADTKH*SYKPEIRK*IHFMKIIYTRKGFLEISLLG 247
           A+ K  S+K + R  I F K  ++R+GF+ I++ G
Sbjct: 27  AEIKQESFKDDSRASILFEKFGFSRRGFVSIAITG 61


>04_04_0481 -
           25541355-25541849,25541933-25542535,25542730-25542837,
           25542925-25543260,25543391-25543461,25543692-25543824
          Length = 581

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = -3

Query: 100 CPAYPPPLEWTLLNVLK--RTCG 38
           CP Y P   W  +N LK   TCG
Sbjct: 387 CPEYSPSARWNCMNCLKAQSTCG 409


>01_01_1004 - 7944214-7944227,7944641-7945769
          Length = 380

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 94 AYPPPLEWTLLNVLKRTCGRNNR 26
          A PPP  W +L  + R CG + +
Sbjct: 4  ASPPPSTWVILGSIPRVCGADEK 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,158
Number of Sequences: 37544
Number of extensions: 240365
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)