Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P23
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)           28   4.1  
SB_21796| Best HMM Match : COLFI (HMM E-Value=0)                       28   4.1  
SB_43785| Best HMM Match : WAP (HMM E-Value=2e-05)                     28   5.4  
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)                 27   7.2  
SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16)                   27   7.2  
SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_57521| Best HMM Match : rve (HMM E-Value=0.13)                      27   7.2  
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 193 MDMPNFLFILIYRIHFYKRLTAPTNLSVPGKCPAYPPPLE 74
           MD     F++   +  Y         +VPG CP +PPP E
Sbjct: 705 MDSGASTFLITKNMLVYTLSYGRQGQTVPGTCPTFPPPAE 744


>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
          Length = 623

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 145 YKRLTAPTNLSVPGKCPAYPPP 80
           ++ +  P N+  PG+ PA PPP
Sbjct: 586 FETVAVPNNIHEPGRFPAVPPP 607


>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
          Length = 1239

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 112 VPGKCPAYPPPLE 74
           VPG CP +PPP E
Sbjct: 40  VPGTCPVFPPPAE 52


>SB_43785| Best HMM Match : WAP (HMM E-Value=2e-05)
          Length = 103

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 106 GKCPAYPPP 80
           GKCPAYPPP
Sbjct: 24  GKCPAYPPP 32


>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
          Length = 550

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 227 NKLSLILPKSEISRNPFLVY 286
           N L  +LP +EI R+P+L+Y
Sbjct: 201 NTLQSVLPDAEIKRSPYLLY 220


>SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16)
          Length = 560

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 158 PYPFLQTAHGAHKFKRPGKMPGLPPP 81
           P+P  QT H  ++   P   PG+P P
Sbjct: 473 PFPPSQTCHHTNRTATPATTPGVPTP 498


>SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 122 CGRREPFVKMDTVN*NKKKIRHIHHFVAKIF-IIHLNKLSLILPKSE 259
           C  R+ FV +D  N   +  RH+  FVA +F ++   ++S +  K +
Sbjct: 125 CQSRKDFVFIDDENSESELERHMAEFVASLFNVLESKRMSKLAEKPD 171


>SB_57521| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 1105

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 227 NKLSLILPKSEISRNPFLVY 286
           N L  +LP +EI R+P+L+Y
Sbjct: 223 NTLQSVLPDAEIKRSPYLLY 242


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 373 EQ*F*DY*TLIKIIYFFLINNMHIHLNNVRLRGGNLS 483
           E+ F  Y  L +   FFL +N  I+ NN  L GGN S
Sbjct: 754 EKPFNCYRFLFQATAFFLASNTRINDNNYCLTGGNCS 790


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,665
Number of Sequences: 59808
Number of extensions: 274018
Number of successful extensions: 532
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)