Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P23
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp...    29   2.0  
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin...    27   6.0  
At5g05260.1 68418.m00564 cytochrome P450 79A2 (CYP79A2) identica...    27   7.9  

>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / ubiquitin family protein
           similar to SP|Q15459 Splicing factor 3 subunit 1
           (Spliceosome associated protein 114) {Homo sapiens};
           contains Pfam profiles PF00240: Ubiquitin family,
           PF01805: Surp module
          Length = 785

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 185 AEFSFYFNLPYPFLQTAHGAHKFKRPGKMPGLPPP 81
           ++F+ +  +P P+ Q    A    +P  MPG+ PP
Sbjct: 629 SQFAHHMQIPRPYGQLPPSAMGMMQPPPMPGMAPP 663


>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
           protein very low similarity to copper homeostasis factor
           from Arabidopsis thaliana [gi:3168840]; contains Pfam
           heavy metal associated domain PF00403
          Length = 352

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 164 NLPYPFLQTAHGAHKFKRPGKMPGLPPP 81
           N PYP + +    H  +  G  PGLPPP
Sbjct: 238 NHPYPTVHSPPRHHPQQMYGPGPGLPPP 265


>At5g05260.1 68418.m00564 cytochrome P450 79A2 (CYP79A2) identical
           to SP|Q9FLC8 Cytochrome P450 79A2 (EC 1.-.-.-)
           {Arabidopsis thaliana}
          Length = 523

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 136 LTAPT-NLSVPGKCPAYPPPLEWTLLNVLKRTCGRNNRYFRY 14
           L +PT NLS+P      P P  W L+  L    GRN   FR+
Sbjct: 25  LISPTRNLSLP------PGPKSWPLIGNLPEILGRNKPVFRW 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,485,530
Number of Sequences: 28952
Number of extensions: 195898
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)