Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P21
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.81 
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   1.9  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   5.7  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 27   7.6  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    27   7.6  
SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)          27   10.0 
SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)                     27   10.0 
SB_15169| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               27   10.0 
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    27   10.0 
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 98   TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 268
            T Y P  T S Y      Q+P+N++LH     +A+        T    L  GKF+S G+ 
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770

Query: 269  IDFHD 283
             D H+
Sbjct: 4771 RDVHE 4775


>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 290 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 159
           P H  NQ  C    IC+  G   KS  KCP    L  S  RC  C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +2

Query: 233  LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 364
            L+KGKF+     S  K ID   E+   F+G+ W ++ DL  +++E  K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 248 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 388
           FE Y    ++ DEKA  ++  Y ++ A  +  E     +RSY  + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 213  KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAM 392
            K + YS   K  ++  AR   S ++  +   + + KR     KKK++R  N  MKL+  +
Sbjct: 893  KFVDYSEKAKLRASAQARNSRSPVEVAIEEEKRVAKRKKEQRKKKVRRRKNAAMKLANKL 952

Query: 393  CS 398
             S
Sbjct: 953  VS 954


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 230 SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 367
           +LQ+G   S   K+++    A+   G+  Q++ ++ E E  +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544


>SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)
          Length = 361

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 436 HEGVLVEWFRCCTEHMASDNFIRSLIILC 350
           H+GV++      T H  +DNFI    I+C
Sbjct: 93  HQGVVISRDDISTSHEEADNFIVQQAIMC 121


>SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)
          Length = 372

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 157 LQSTQRKELRSNTVLGHF*KDFRTVPTERQIRIVWQE 267
           L    +     NT   HF + + TV  +R I I W E
Sbjct: 84  LDENSKSSTMKNTWTSHFKRGYLTVHPDRTISIEWDE 120


>SB_15169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/75 (22%), Positives = 37/75 (49%)
 Frame = +3

Query: 210 LKRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLA 389
           + + S S     + N      ++  K  +T +E+  K+TP   K++ +R+++DL++    
Sbjct: 1   MDKTSASSNTTGDENENGSFCVAKGKCTVTYAES-AKKTP---KRRERRLVSDLIRADRK 56

Query: 390 MCSVQHLNHSTSTPS 434
             + +H N    TP+
Sbjct: 57  QANGKHKNGQKRTPT 71


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
 Frame = +2

Query: 17   LTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQR-PDNYNLHSVKNYEAI 193
            LTTR   + +   LG+ P    YSP  TG  P  +  Y P +     N N  +     A+
Sbjct: 700  LTTRQLLQVILLCLGTSPTSPQYSPASTG--PSPSPEYSPSSPNYTPNINTSAYSLVPAL 757

Query: 194  RFLDIFEKTFVQS---LQKGKFESYGKKIDFHDEKAINFVGNYW 316
              L I+ K   ++    ++ + E+   KIDF ++  +   G  W
Sbjct: 758  TPL-IYPKDLTKAKKMTKQNRKENKSDKIDFLEQDPLPEGGWGW 800


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 104  YYPLMTSYYFPFAQRPDNYN 163
            Y PL T+ ++ +  RP NYN
Sbjct: 1560 YSPLSTAPFYDYGYRPQNYN 1579


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 151  RPLSEWEIV*SHQGIVTSLN 92
            RPL +W IV ++QG + S+N
Sbjct: 3254 RPLEDWPIVPTNQGTLVSVN 3273


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 155 NYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAI--NFVGNYWQENA 328
           +Y    V++YE   +   +++++ +S ++    SY +  +   E++   ++  +Y +   
Sbjct: 192 SYKRSYVRSYER-SYKRSYKRSYKRSYKRSYKRSYKRSYERSYERSYKRSYKRSYERSYE 250

Query: 329 DLYEEEVTKDYQRSYE 376
             YE    + Y+RSYE
Sbjct: 251 RSYERSYERSYERSYE 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,677,331
Number of Sequences: 59808
Number of extensions: 291405
Number of successful extensions: 873
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)