Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P20
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    29   2.4  
Z68750-1|CAA92963.1|  284|Caenorhabditis elegans Hypothetical pr...    27   9.8  
X17077-1|CAA34929.1|  202|Caenorhabditis elegans ceh-13 homeodom...    27   9.8  
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ...    27   9.8  
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut...    27   9.8  
AC006679-1|AAK84466.1|  202|Caenorhabditis elegans C.elegans hom...    27   9.8  

>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
            protein F53G12.3 protein.
          Length = 1503

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 366  RKTRTGSVFTAANSKGVYGSGNYDLSNLE 452
            R   TGS F   + KG YG GN +  N E
Sbjct: 1301 RSLNTGSPFPLIHMKGPYGDGNQEWMNYE 1329


>Z68750-1|CAA92963.1|  284|Caenorhabditis elegans Hypothetical
           protein K01A6.4 protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
 Frame = +3

Query: 240 GFYGAQRGNMGGNFERAH--NMDGLAQHQMGGLVKQVQGELGEGRKTRTGSVFTAANSKG 413
           GF G Q+G  GG  ++       G   +  GG   Q  G  G+G+++  G  F   +  G
Sbjct: 106 GFEG-QQGGFGGFGQQVGFGGQGGFGGNSQGGFGGQQSGFGGQGQQSGFGGGFGGNSQNG 164

Query: 414 VYGSGNYDLSNLEGRNFQEG 473
                    S   G+  Q G
Sbjct: 165 FPAQRPSQQSGFGGQGMQSG 184


>X17077-1|CAA34929.1|  202|Caenorhabditis elegans ceh-13 homeodomain
           protein protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 303 HPYCARVQNSLPYFPSEHHKSQIYFLHPRNF 211
           H Y   V +S  Y P  HH + I+  HP N+
Sbjct: 22  HSYYPSVPSS--YSPLNHHPADIWAAHPSNY 50


>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
            protein.
          Length = 1497

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 366  RKTRTGSVFTAANSKGVYGSGNYDLSNLE 452
            R   TGS F   + KG YG GN +  + E
Sbjct: 1295 RSLNTGSPFPLIHMKGPYGDGNQEWMDYE 1323


>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cuticle
            protein 3 protein.
          Length = 1497

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 366  RKTRTGSVFTAANSKGVYGSGNYDLSNLE 452
            R   TGS F   + KG YG GN +  + E
Sbjct: 1295 RSLNTGSPFPLIHMKGPYGDGNQEWMDYE 1323


>AC006679-1|AAK84466.1|  202|Caenorhabditis elegans C.elegans
           homeobox protein 13 protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 303 HPYCARVQNSLPYFPSEHHKSQIYFLHPRNF 211
           H Y   V +S  Y P  HH + I+  HP N+
Sbjct: 22  HSYYPSVPSS--YSPLNHHPADIWAAHPSNY 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,946
Number of Sequences: 27780
Number of extensions: 200063
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)