Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P17
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    28   0.73 
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    27   1.3  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   2.9  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   5.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   5.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   5.1  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   6.8  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.0  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = +3

Query: 147 PMSCR*DFQSCISVTKLQQNGGLSCSNFPWSFVGT--SECMLRVVFYNKLNLNTITKLFH 320
           P+S   D  + I    +Q     + SN+P+    +  S   L  ++ ++++       F 
Sbjct: 223 PLSSSGDGSTAIHAGPIQHQNSNAFSNYPYPLDASHLSSQQLLSMYRDQVSHGVTPSTF- 281

Query: 321 TKRHQDYMI*SQVHKFNELKKTIATCQTEIPPKNSQVILIQLPDNISTISSA 476
            + H+ +M  +Q+    EL K++      IPP  +  ++     +   +SSA
Sbjct: 282 -RNHESFMP-TQLVSATELSKSVDNAVLPIPPTTAPAVVSPPASSFPLMSSA 331


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 388 LLHVRLRSRQKTRR*FSFNFPIIFLRYLQHMWFIYFHC 501
           +LH +  SR +T     F + I+   YL  +WF+Y+ C
Sbjct: 173 VLHKKYASRLETSARLGFLWSIV---YLHVIWFLYYAC 207


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 311 TISHKTPPRLHDIESSTQV**IKENNCYMSD*DPAKKLA--GNSHSTS 448
           TI     P++HD E+ TQ+    +NN  +S  +P+ + A  GN  + S
Sbjct: 269 TIPEDFEPQVHDHENQTQLNHHLDNNSSISSHNPSLETANDGNQETVS 316


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 351 SQVHKFNELKKTIATCQTEIPPKNSQVILIQLPDNI 458
           S+  K N  KKT     T+IP ++S   L+   +N+
Sbjct: 423 SEFDKLNSEKKTFEILSTDIPAEDSMNSLLNDEENL 458


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 161  VRFSILYQRYQAPTERWPILLKLSMELCRHLRMYATRCL 277
            + F+    R QA  ++W     +S +L R  R+Y   CL
Sbjct: 1742 IHFAEYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 161  VRFSILYQRYQAPTERWPILLKLSMELCRHLRMYATRCL 277
            + F+    R QA  ++W     +S +L R  R+Y   CL
Sbjct: 1742 IHFAEYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 333 QDYMI*SQVHKFNELKKTIATCQTEIPPKNSQVIL-IQLPDNISTISSAYVVHIF 494
           Q+Y++  Q  K ++L   I     +I   N +++  ++    IS ISS+Y+VHIF
Sbjct: 270 QNYVL-QQTRKESKLWSFIKKVFHDIKYANYRLLHNLRAFPGISAISSSYLVHIF 323


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 178 QD*KSYLHDIGTNCVYTQIAI 116
           +D KS++HD+   C ++ +A+
Sbjct: 117 KDWKSFIHDVNMACSFSDVAL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,201
Number of Sequences: 5004
Number of extensions: 42659
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)