Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P17
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2089| Best HMM Match : rve (HMM E-Value=4.3e-20)                    31   0.75 
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.00 
SB_55662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)                   29   3.0  
SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17)                   29   3.0  
SB_36237| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 27   9.3  
SB_16015| Best HMM Match : Cytochrom_B559a (HMM E-Value=2.3)           27   9.3  

>SB_2089| Best HMM Match : rve (HMM E-Value=4.3e-20)
          Length = 240

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 91  YLRIDKDNVEDMHSIMEGNKLKEGERGWI 5
           Y R  +++ +  HS+ EG +L EG+R WI
Sbjct: 178 YRRQMREDYDRRHSVAEGEELAEGDRVWI 206


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 423 SQVILIQLPDNISTISSAYVVHIFPLY 503
           S  ++   P+NIS  +SA +VHIF LY
Sbjct: 331 SAFLIASFPNNISQSTSAGIVHIFSLY 357


>SB_55662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 91  YLRIDKDNVEDMHSIMEGNKLKEGERGWI 5
           Y R  +++ +  H + EG +L EG+R WI
Sbjct: 94  YRRQMREDYDRRHRVAEGEELAEGDRVWI 122


>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
          Length = 1198

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 76   KDNVEDMHSIMEGNKLKEGERGWI 5
            +++ +  H + EG KL EG+R WI
Sbjct: 1046 REDYDRRHRVAEGEKLAEGDRVWI 1069


>SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17)
          Length = 745

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 91  YLRIDKDNVEDMHSIMEGNKLKEGERGWI 5
           Y R  +++ +  H + EG +L EG+R WI
Sbjct: 633 YRRQMREDYDRRHRVAEGEELAEGDRVWI 661


>SB_36237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 527

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 91  YLRIDKDNVEDMHSIMEGNKLKEGERGWI 5
           Y R  +++ +  H + EG +L EG+R WI
Sbjct: 370 YRRQMREDYDRRHRVAEGEELAEGDRVWI 398


>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 61  DMHSIMEGNKLKEGERGWI 5
           D H + EG +L EG+R W+
Sbjct: 870 DRHRVAEGEELAEGDRVWV 888


>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 85   RIDKDNVEDM-HSIMEGNKLKEGERGWI 5
            R +K+  E++ H + EG +L EG+R WI
Sbjct: 1040 RDNKELFEEVRHRVAEGEELAEGDRVWI 1067


>SB_16015| Best HMM Match : Cytochrom_B559a (HMM E-Value=2.3)
          Length = 154

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 76 KDNVEDMHSIMEGNKLKEGERGWI 5
          +++ +  H + EG +L EG+R WI
Sbjct: 2  REDYDRRHRVAEGEELAEGDRVWI 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,858,781
Number of Sequences: 59808
Number of extensions: 307247
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)