Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P17
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine rece...    30   1.1  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    29   2.0  

>U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein20 protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +2

Query: 26  LQLISFHNRVHVFYVIFIYPQVILFFFLLVNGNLCVHTICANVM*VRFSILYQRY-QAPT 202
           L  I+  NRV   YVIF+Y +V   F   +   +C+    A VM   F  L + Y     
Sbjct: 93  LNFINSFNRVFSVYVIFLYEKVFSNFNTYI--MICMAYAIAIVMCTTFYELLECYLYFHA 150

Query: 203 ERWPILLKLSMELCRHLRMY 262
           + W I      E C HL  Y
Sbjct: 151 DLW-IFSYPETEHCNHLTWY 169


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 252 SECMLRVVFYNKLNLNTITKLFHTKRHQD 338
           SE + +++  N ++ NTI K FH KR  D
Sbjct: 145 SESLQKILEENNMHANTIAKKFHDKRSSD 173


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 32  LISFHNRVHVFYVIFIYPQVILFF 103
           LI  H RVH  Y  FI   VI FF
Sbjct: 153 LIHIHKRVHYLYFAFITKTVIFFF 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,996,613
Number of Sequences: 27780
Number of extensions: 242997
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)