Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P17
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote...    30   1.1  
At3g56430.1 68416.m06276 expressed protein unknown protein At2g4...    29   2.5  
At3g12890.1 68416.m01606 expressed protein                             27   7.6  
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr...    27   7.6  

>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
           similar to lethal leaf-spot 1 from Zea mays
           [gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
           domain
          Length = 537

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 180 ISVTKLQQNGGLSCSNFPWSFVGTSEC 260
           +S  +L +NG L CS   WSF G   C
Sbjct: 137 LSEGRLDENGHLQCSYHGWSFGGCGSC 163


>At3g56430.1 68416.m06276 expressed protein unknown protein
           At2g40800 - Arabidopsis thaliana, EMBL:AC007660
          Length = 434

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 136 HNLCQCHVGKIFNLVSALPSSNRTVAYPAQTFHGALSAPQNVCYALSSII 285
           H        K F L   LPS+  +   P  +FH  LS P +    LS I+
Sbjct: 55  HTFSSRPTSKNFGLSQILPSNGVSQLQPKTSFHSFLSRPTSKNVGLSQIL 104


>At3g12890.1 68416.m01606 expressed protein
          Length = 251

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 276 FYNKLNLNTITKLFHTKRHQDY 341
           +Y K+++N  T  FH   HQ+Y
Sbjct: 75  YYQKMSVNNATHYFHGGDHQEY 96


>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 934

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 174 SCISVTKLQQNGGLSCSNFPWSFVG-TSECMLRVVFYNKLNLN 299
           S  S T+  Q GG  CS  PWS+V   S+   RVV     ++N
Sbjct: 383 SLYSSTEWAQEGGDPCSPSPWSWVQCNSDPQPRVVAIKLSSMN 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,117,624
Number of Sequences: 28952
Number of extensions: 212966
Number of successful extensions: 464
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)